Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13380

Experiment: marine_broth_2216 with Chloride 500 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_13375 and CA264_13380 are separated by 21 nucleotidesCA264_13380 and CA264_13385 are separated by 128 nucleotidesCA264_13385 and CA264_13390 are separated by 93 nucleotides CA264_13375: CA264_13375 - GTPase Obg, at 3,119,134 to 3,120,126 _13375 CA264_13380: CA264_13380 - adenylate kinase, at 3,120,148 to 3,120,744 _13380 CA264_13385: CA264_13385 - hypoxanthine phosphoribosyltransferase, at 3,120,873 to 3,121,415 _13385 CA264_13390: CA264_13390 - sodium-translocating pyrophosphatase, at 3,121,509 to 3,123,773 _13390 Position (kb) 3120 3121Strain fitness (log2 ratio) -2 -1 0 1at 3120.772 kb on + strandat 3120.772 kb on + strandat 3120.773 kb on - strandat 3120.775 kb on - strandat 3120.775 kb on - strandat 3120.775 kb on - strandat 3120.780 kb on + strandat 3120.780 kb on + strandat 3120.791 kb on + strandat 3120.823 kb on - strandat 3120.922 kb on + strandat 3120.974 kb on - strand, within CA264_13385at 3120.974 kb on - strand, within CA264_13385at 3120.985 kb on - strand, within CA264_13385at 3121.065 kb on + strand, within CA264_13385at 3121.066 kb on - strand, within CA264_13385at 3121.260 kb on - strand, within CA264_13385at 3121.332 kb on + strand, within CA264_13385at 3121.369 kb on + strandat 3121.377 kb on - strandat 3121.417 kb on + strandat 3121.418 kb on - strandat 3121.424 kb on + strandat 3121.428 kb on + strandat 3121.429 kb on - strandat 3121.437 kb on + strandat 3121.437 kb on + strandat 3121.445 kb on + strandat 3121.449 kb on + strandat 3121.490 kb on + strandat 3121.495 kb on + strandat 3121.558 kb on - strandat 3121.558 kb on - strandat 3121.559 kb on + strandat 3121.559 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
remove
3,120,772 + -0.9
3,120,772 + -2.0
3,120,773 - +0.7
3,120,775 - +1.0
3,120,775 - +0.6
3,120,775 - +0.3
3,120,780 + +0.5
3,120,780 + +0.8
3,120,791 + -0.7
3,120,823 - +0.5
3,120,922 + -0.0
3,120,974 - CA264_13385 0.19 -0.8
3,120,974 - CA264_13385 0.19 -0.7
3,120,985 - CA264_13385 0.21 -0.6
3,121,065 + CA264_13385 0.35 -0.7
3,121,066 - CA264_13385 0.36 -1.4
3,121,260 - CA264_13385 0.71 -0.8
3,121,332 + CA264_13385 0.85 -0.5
3,121,369 + -1.8
3,121,377 - -0.4
3,121,417 + +0.2
3,121,418 - +0.0
3,121,424 + -0.3
3,121,428 + +0.2
3,121,429 - +0.2
3,121,437 + -0.6
3,121,437 + +1.0
3,121,445 + +0.3
3,121,449 + +0.0
3,121,490 + -0.5
3,121,495 + -0.1
3,121,558 - -0.2
3,121,558 - +1.0
3,121,559 + -0.9
3,121,559 + +0.5

Or see this region's nucleotide sequence