Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12495 and CA264_12500 are separated by 178 nucleotides CA264_12500 and CA264_12505 overlap by 4 nucleotides CA264_12505 and CA264_12510 overlap by 11 nucleotides
CA264_12495: CA264_12495 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 2,909,912 to 2,910,934
_12495
CA264_12500: CA264_12500 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, at 2,911,113 to 2,912,507
_12500
CA264_12505: CA264_12505 - acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase, at 2,912,504 to 2,913,295
_12505
CA264_12510: CA264_12510 - ABC transporter ATP-binding protein, at 2,913,285 to 2,913,917
_12510
Position (kb)
2911
2912
2913 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2910.946 kb on - strand at 2910.946 kb on - strand at 2910.968 kb on + strand at 2910.988 kb on - strand at 2910.992 kb on + strand at 2910.992 kb on + strand at 2911.031 kb on + strand at 2911.031 kb on + strand at 2911.034 kb on - strand at 2911.034 kb on - strand at 2911.034 kb on - strand at 2911.037 kb on + strand at 2911.037 kb on + strand at 2911.059 kb on + strand at 2911.079 kb on + strand at 2911.102 kb on + strand at 2911.103 kb on - strand at 2911.103 kb on - strand at 2911.103 kb on - strand at 2912.491 kb on + strand at 2912.518 kb on - strand at 2912.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 2,910,946 - -0.6 2,910,946 - -1.8 2,910,968 + +0.2 2,910,988 - +0.3 2,910,992 + -0.4 2,910,992 + -0.6 2,911,031 + -0.5 2,911,031 + -0.1 2,911,034 - -0.9 2,911,034 - -0.4 2,911,034 - +0.7 2,911,037 + -1.0 2,911,037 + -0.1 2,911,059 + +0.1 2,911,079 + -1.3 2,911,102 + +0.7 2,911,103 - -0.9 2,911,103 - +0.0 2,911,103 - -0.2 2,912,491 + -0.8 2,912,518 - +0.9 2,912,527 - +2.6
Or see this region's nucleotide sequence