Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07120 and CA264_07125 are separated by 152 nucleotides CA264_07125 and CA264_07130 are separated by 237 nucleotides
CA264_07120: CA264_07120 - citrate (Si)-synthase, at 1,641,138 to 1,642,424
_07120
CA264_07125: CA264_07125 - 6-carboxytetrahydropterin synthase QueD, at 1,642,577 to 1,643,026
_07125
CA264_07130: CA264_07130 - hypothetical protein, at 1,643,264 to 1,645,189
_07130
Position (kb)
1642
1643
1644 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1642.402 kb on - strand at 1642.402 kb on - strand at 1642.409 kb on + strand at 1642.410 kb on - strand at 1642.435 kb on + strand at 1642.436 kb on - strand at 1642.438 kb on - strand at 1642.563 kb on + strand at 1642.564 kb on - strand at 1642.564 kb on - strand at 1642.570 kb on - strand at 1642.606 kb on + strand at 1642.637 kb on + strand, within CA264_07125 at 1642.638 kb on - strand, within CA264_07125 at 1642.638 kb on - strand, within CA264_07125 at 1642.673 kb on + strand, within CA264_07125 at 1642.673 kb on + strand, within CA264_07125 at 1642.673 kb on + strand, within CA264_07125 at 1642.687 kb on - strand, within CA264_07125 at 1642.758 kb on + strand, within CA264_07125 at 1642.785 kb on + strand, within CA264_07125 at 1642.785 kb on + strand, within CA264_07125 at 1642.883 kb on + strand, within CA264_07125 at 1642.953 kb on + strand, within CA264_07125 at 1642.954 kb on - strand, within CA264_07125 at 1642.954 kb on - strand, within CA264_07125 at 1642.968 kb on + strand, within CA264_07125 at 1643.007 kb on - strand at 1643.069 kb on + strand at 1643.085 kb on + strand at 1643.086 kb on - strand at 1643.092 kb on - strand at 1643.152 kb on - strand at 1643.156 kb on + strand at 1643.157 kb on - strand at 1643.188 kb on + strand at 1643.188 kb on + strand at 1643.188 kb on + strand at 1643.189 kb on - strand at 1643.189 kb on - strand at 1643.189 kb on - strand at 1643.197 kb on + strand at 1643.221 kb on - strand at 1643.231 kb on - strand at 1643.236 kb on + strand at 1643.265 kb on + strand at 1643.266 kb on - strand at 1643.266 kb on - strand at 1643.346 kb on + strand at 1643.347 kb on - strand at 1643.380 kb on + strand at 1643.381 kb on - strand at 1643.394 kb on + strand at 1643.506 kb on + strand, within CA264_07130 at 1643.506 kb on + strand, within CA264_07130 at 1643.554 kb on + strand, within CA264_07130 at 1643.555 kb on - strand, within CA264_07130 at 1643.556 kb on + strand, within CA264_07130 at 1643.622 kb on + strand, within CA264_07130 at 1643.623 kb on - strand, within CA264_07130 at 1643.663 kb on - strand, within CA264_07130 at 1643.710 kb on - strand, within CA264_07130 at 1643.719 kb on - strand, within CA264_07130 at 1643.749 kb on - strand, within CA264_07130 at 1643.749 kb on - strand, within CA264_07130 at 1643.808 kb on + strand, within CA264_07130 at 1643.808 kb on + strand, within CA264_07130 at 1643.871 kb on + strand, within CA264_07130 at 1643.872 kb on - strand, within CA264_07130 at 1643.875 kb on + strand, within CA264_07130 at 1643.875 kb on + strand, within CA264_07130 at 1643.876 kb on - strand, within CA264_07130 at 1643.919 kb on + strand, within CA264_07130 at 1643.919 kb on + strand, within CA264_07130 at 1643.920 kb on - strand, within CA264_07130 at 1643.927 kb on + strand, within CA264_07130 at 1643.928 kb on - strand, within CA264_07130 at 1643.928 kb on - strand, within CA264_07130 at 1643.928 kb on - strand, within CA264_07130 at 1643.929 kb on + strand, within CA264_07130 at 1643.929 kb on + strand, within CA264_07130 at 1643.929 kb on + strand, within CA264_07130 at 1643.929 kb on + strand, within CA264_07130 at 1643.930 kb on - strand, within CA264_07130 at 1643.930 kb on - strand, within CA264_07130 at 1643.930 kb on - strand, within CA264_07130 at 1643.967 kb on + strand, within CA264_07130
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 1,642,402 - -0.2 1,642,402 - -0.1 1,642,409 + -0.2 1,642,410 - -1.0 1,642,435 + -0.2 1,642,436 - +0.5 1,642,438 - +0.8 1,642,563 + +0.3 1,642,564 - -0.7 1,642,564 - +0.7 1,642,570 - -0.4 1,642,606 + -0.1 1,642,637 + CA264_07125 0.13 -1.4 1,642,638 - CA264_07125 0.14 -1.2 1,642,638 - CA264_07125 0.14 -1.8 1,642,673 + CA264_07125 0.21 -0.6 1,642,673 + CA264_07125 0.21 -1.5 1,642,673 + CA264_07125 0.21 -0.3 1,642,687 - CA264_07125 0.24 -0.6 1,642,758 + CA264_07125 0.40 +0.8 1,642,785 + CA264_07125 0.46 -0.8 1,642,785 + CA264_07125 0.46 +0.2 1,642,883 + CA264_07125 0.68 -0.2 1,642,953 + CA264_07125 0.84 -1.0 1,642,954 - CA264_07125 0.84 -1.5 1,642,954 - CA264_07125 0.84 -0.1 1,642,968 + CA264_07125 0.87 +0.3 1,643,007 - -0.1 1,643,069 + +0.3 1,643,085 + -0.2 1,643,086 - -0.4 1,643,092 - -1.8 1,643,152 - +0.0 1,643,156 + +1.0 1,643,157 - +0.0 1,643,188 + +0.4 1,643,188 + +0.6 1,643,188 + -0.4 1,643,189 - +0.2 1,643,189 - +0.0 1,643,189 - -0.3 1,643,197 + -0.5 1,643,221 - +0.3 1,643,231 - -0.5 1,643,236 + -0.4 1,643,265 + -0.1 1,643,266 - +0.8 1,643,266 - +0.2 1,643,346 + +0.0 1,643,347 - +0.1 1,643,380 + -0.8 1,643,381 - -0.4 1,643,394 + +0.0 1,643,506 + CA264_07130 0.13 -0.8 1,643,506 + CA264_07130 0.13 -0.8 1,643,554 + CA264_07130 0.15 +1.8 1,643,555 - CA264_07130 0.15 -0.3 1,643,556 + CA264_07130 0.15 -1.1 1,643,622 + CA264_07130 0.19 +0.2 1,643,623 - CA264_07130 0.19 -1.6 1,643,663 - CA264_07130 0.21 -0.4 1,643,710 - CA264_07130 0.23 -0.5 1,643,719 - CA264_07130 0.24 +0.1 1,643,749 - CA264_07130 0.25 -0.1 1,643,749 - CA264_07130 0.25 +0.4 1,643,808 + CA264_07130 0.28 +0.0 1,643,808 + CA264_07130 0.28 +0.8 1,643,871 + CA264_07130 0.32 +0.0 1,643,872 - CA264_07130 0.32 +0.2 1,643,875 + CA264_07130 0.32 +1.2 1,643,875 + CA264_07130 0.32 -1.2 1,643,876 - CA264_07130 0.32 -0.3 1,643,919 + CA264_07130 0.34 -0.1 1,643,919 + CA264_07130 0.34 -0.6 1,643,920 - CA264_07130 0.34 -0.5 1,643,927 + CA264_07130 0.34 -1.5 1,643,928 - CA264_07130 0.34 +0.8 1,643,928 - CA264_07130 0.34 -1.0 1,643,928 - CA264_07130 0.34 -0.2 1,643,929 + CA264_07130 0.35 -1.1 1,643,929 + CA264_07130 0.35 +0.8 1,643,929 + CA264_07130 0.35 -0.6 1,643,929 + CA264_07130 0.35 -0.7 1,643,930 - CA264_07130 0.35 -0.2 1,643,930 - CA264_07130 0.35 -0.5 1,643,930 - CA264_07130 0.35 -0.1 1,643,967 + CA264_07130 0.37 -1.2
Or see this region's nucleotide sequence