Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03980

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03975 and CA264_03980 are separated by 25 nucleotidesCA264_03980 and CA264_03985 are separated by 156 nucleotides CA264_03975: CA264_03975 - hypothetical protein, at 920,737 to 921,765 _03975 CA264_03980: CA264_03980 - hypothetical protein, at 921,791 to 924,523 _03980 CA264_03985: CA264_03985 - hypothetical protein, at 924,680 to 925,408 _03985 Position (kb) 921 922 923 924 925Strain fitness (log2 ratio) -2 -1 0 1 2at 920.855 kb on + strand, within CA264_03975at 920.881 kb on + strand, within CA264_03975at 921.083 kb on - strand, within CA264_03975at 921.088 kb on + strand, within CA264_03975at 921.106 kb on - strand, within CA264_03975at 921.106 kb on - strand, within CA264_03975at 921.106 kb on - strand, within CA264_03975at 921.139 kb on - strand, within CA264_03975at 921.180 kb on + strand, within CA264_03975at 921.358 kb on - strand, within CA264_03975at 921.472 kb on + strand, within CA264_03975at 921.489 kb on + strand, within CA264_03975at 921.578 kb on + strand, within CA264_03975at 921.578 kb on + strand, within CA264_03975at 921.578 kb on + strand, within CA264_03975at 921.582 kb on + strand, within CA264_03975at 921.582 kb on + strand, within CA264_03975at 921.582 kb on + strand, within CA264_03975at 921.582 kb on + strand, within CA264_03975at 921.583 kb on - strand, within CA264_03975at 921.601 kb on + strand, within CA264_03975at 921.601 kb on + strand, within CA264_03975at 921.601 kb on + strand, within CA264_03975at 921.601 kb on + strand, within CA264_03975at 921.602 kb on - strand, within CA264_03975at 921.602 kb on - strand, within CA264_03975at 921.602 kb on - strand, within CA264_03975at 921.602 kb on - strand, within CA264_03975at 921.602 kb on - strand, within CA264_03975at 921.602 kb on - strand, within CA264_03975at 921.787 kb on - strandat 921.787 kb on - strandat 921.846 kb on + strandat 921.846 kb on + strandat 921.846 kb on + strandat 921.846 kb on + strandat 921.846 kb on + strandat 921.846 kb on + strandat 921.847 kb on - strandat 921.850 kb on + strandat 921.850 kb on + strandat 921.850 kb on + strandat 921.850 kb on + strandat 921.850 kb on + strandat 921.850 kb on + strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.913 kb on + strandat 921.914 kb on - strandat 921.965 kb on - strandat 921.971 kb on - strandat 921.975 kb on - strandat 922.010 kb on + strandat 922.010 kb on + strandat 922.010 kb on + strandat 922.011 kb on - strandat 922.011 kb on - strandat 922.206 kb on + strand, within CA264_03980at 922.320 kb on - strand, within CA264_03980at 922.322 kb on + strand, within CA264_03980at 922.322 kb on + strand, within CA264_03980at 922.323 kb on - strand, within CA264_03980at 922.352 kb on + strand, within CA264_03980at 922.365 kb on + strand, within CA264_03980at 922.370 kb on + strand, within CA264_03980at 922.371 kb on - strand, within CA264_03980at 922.371 kb on - strand, within CA264_03980at 922.379 kb on + strand, within CA264_03980at 922.380 kb on - strand, within CA264_03980at 922.380 kb on - strand, within CA264_03980at 922.402 kb on - strand, within CA264_03980at 922.406 kb on - strand, within CA264_03980at 922.453 kb on + strand, within CA264_03980at 922.453 kb on + strand, within CA264_03980at 922.463 kb on - strand, within CA264_03980at 922.763 kb on + strand, within CA264_03980at 922.892 kb on - strand, within CA264_03980at 922.895 kb on + strand, within CA264_03980at 922.895 kb on + strand, within CA264_03980at 922.896 kb on - strand, within CA264_03980at 922.896 kb on - strand, within CA264_03980at 922.977 kb on + strand, within CA264_03980at 922.977 kb on + strand, within CA264_03980at 922.978 kb on - strand, within CA264_03980at 923.042 kb on - strand, within CA264_03980at 923.046 kb on - strand, within CA264_03980at 923.235 kb on - strand, within CA264_03980at 923.243 kb on + strand, within CA264_03980at 923.244 kb on - strand, within CA264_03980at 923.244 kb on - strand, within CA264_03980at 923.297 kb on + strand, within CA264_03980at 923.297 kb on + strand, within CA264_03980at 923.298 kb on - strand, within CA264_03980at 923.298 kb on - strand, within CA264_03980at 923.298 kb on - strand, within CA264_03980at 923.327 kb on + strand, within CA264_03980at 923.441 kb on + strand, within CA264_03980at 923.442 kb on - strand, within CA264_03980at 923.442 kb on - strand, within CA264_03980at 923.442 kb on - strand, within CA264_03980at 923.511 kb on + strand, within CA264_03980at 923.564 kb on - strand, within CA264_03980at 923.590 kb on + strand, within CA264_03980at 923.591 kb on - strand, within CA264_03980at 923.611 kb on + strand, within CA264_03980at 923.612 kb on - strand, within CA264_03980at 923.612 kb on - strand, within CA264_03980at 923.612 kb on - strand, within CA264_03980at 923.687 kb on + strand, within CA264_03980at 923.688 kb on - strand, within CA264_03980at 923.688 kb on - strand, within CA264_03980at 923.700 kb on - strand, within CA264_03980at 923.795 kb on + strand, within CA264_03980at 923.822 kb on + strand, within CA264_03980at 923.823 kb on - strand, within CA264_03980at 923.823 kb on - strand, within CA264_03980at 923.834 kb on + strand, within CA264_03980at 923.874 kb on - strand, within CA264_03980at 923.925 kb on + strand, within CA264_03980at 923.932 kb on + strand, within CA264_03980at 923.996 kb on + strand, within CA264_03980at 923.997 kb on - strand, within CA264_03980at 924.063 kb on + strand, within CA264_03980at 924.261 kb on - strandat 924.365 kb on + strandat 924.369 kb on - strandat 924.369 kb on - strandat 924.371 kb on - strandat 924.526 kb on + strandat 924.546 kb on + strandat 924.547 kb on - strandat 924.547 kb on - strandat 924.550 kb on + strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.552 kb on + strandat 924.552 kb on + strandat 924.658 kb on + strandat 924.658 kb on + strandat 924.659 kb on - strandat 924.662 kb on + strandat 924.676 kb on - strandat 924.682 kb on - strandat 924.682 kb on - strandat 924.810 kb on - strand, within CA264_03985at 924.971 kb on - strand, within CA264_03985at 925.027 kb on + strand, within CA264_03985at 925.133 kb on + strand, within CA264_03985at 925.156 kb on + strand, within CA264_03985at 925.157 kb on - strand, within CA264_03985at 925.267 kb on + strand, within CA264_03985at 925.267 kb on + strand, within CA264_03985at 925.267 kb on + strand, within CA264_03985at 925.268 kb on - strand, within CA264_03985at 925.268 kb on - strand, within CA264_03985at 925.326 kb on - strand, within CA264_03985at 925.335 kb on + strand, within CA264_03985at 925.336 kb on - strandat 925.354 kb on - strandat 925.354 kb on - strandat 925.408 kb on + strandat 925.471 kb on - strandat 925.483 kb on - strandat 925.512 kb on + strandat 925.512 kb on + strandat 925.512 kb on + strandat 925.513 kb on - strandat 925.513 kb on - strandat 925.520 kb on + strandat 925.520 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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920,855 + CA264_03975 0.11 +0.8
920,881 + CA264_03975 0.14 -0.2
921,083 - CA264_03975 0.34 +0.2
921,088 + CA264_03975 0.34 -1.2
921,106 - CA264_03975 0.36 -0.9
921,106 - CA264_03975 0.36 +0.4
921,106 - CA264_03975 0.36 -0.5
921,139 - CA264_03975 0.39 -0.1
921,180 + CA264_03975 0.43 +0.1
921,358 - CA264_03975 0.60 +0.3
921,472 + CA264_03975 0.71 +2.2
921,489 + CA264_03975 0.73 -0.1
921,578 + CA264_03975 0.82 +0.6
921,578 + CA264_03975 0.82 +0.0
921,578 + CA264_03975 0.82 +0.2
921,582 + CA264_03975 0.82 -0.4
921,582 + CA264_03975 0.82 +0.3
921,582 + CA264_03975 0.82 -0.9
921,582 + CA264_03975 0.82 +0.2
921,583 - CA264_03975 0.82 +0.7
921,601 + CA264_03975 0.84 +0.2
921,601 + CA264_03975 0.84 +1.2
921,601 + CA264_03975 0.84 +0.4
921,601 + CA264_03975 0.84 -0.7
921,602 - CA264_03975 0.84 -0.2
921,602 - CA264_03975 0.84 -1.7
921,602 - CA264_03975 0.84 -0.4
921,602 - CA264_03975 0.84 +0.2
921,602 - CA264_03975 0.84 +0.0
921,602 - CA264_03975 0.84 -1.0
921,787 - -1.1
921,787 - +1.2
921,846 + -0.1
921,846 + -0.2
921,846 + -0.6
921,846 + +0.1
921,846 + -1.1
921,846 + -1.1
921,847 - +1.6
921,850 + -0.0
921,850 + -0.1
921,850 + -0.1
921,850 + -0.7
921,850 + +0.0
921,850 + -0.7
921,851 - -1.0
921,851 - -0.6
921,851 - -1.4
921,851 - -0.1
921,851 - -0.0
921,851 - -1.2
921,851 - +0.9
921,851 - -0.1
921,851 - +0.3
921,851 - +1.6
921,913 + -0.1
921,914 - -0.8
921,965 - +0.2
921,971 - -0.7
921,975 - -0.1
922,010 + -0.1
922,010 + -1.1
922,010 + +1.1
922,011 - +0.3
922,011 - -0.5
922,206 + CA264_03980 0.15 -0.9
922,320 - CA264_03980 0.19 -0.4
922,322 + CA264_03980 0.19 +0.3
922,322 + CA264_03980 0.19 -0.3
922,323 - CA264_03980 0.19 -0.7
922,352 + CA264_03980 0.21 -1.4
922,365 + CA264_03980 0.21 -0.3
922,370 + CA264_03980 0.21 +0.9
922,371 - CA264_03980 0.21 +0.7
922,371 - CA264_03980 0.21 -0.1
922,379 + CA264_03980 0.22 +1.1
922,380 - CA264_03980 0.22 -0.4
922,380 - CA264_03980 0.22 +0.0
922,402 - CA264_03980 0.22 -1.4
922,406 - CA264_03980 0.23 -0.1
922,453 + CA264_03980 0.24 -0.0
922,453 + CA264_03980 0.24 -0.4
922,463 - CA264_03980 0.25 -0.5
922,763 + CA264_03980 0.36 -0.1
922,892 - CA264_03980 0.40 -0.1
922,895 + CA264_03980 0.40 -0.2
922,895 + CA264_03980 0.40 -1.1
922,896 - CA264_03980 0.40 +0.8
922,896 - CA264_03980 0.40 +0.1
922,977 + CA264_03980 0.43 +0.3
922,977 + CA264_03980 0.43 +0.2
922,978 - CA264_03980 0.43 -0.0
923,042 - CA264_03980 0.46 -0.1
923,046 - CA264_03980 0.46 -0.5
923,235 - CA264_03980 0.53 -0.1
923,243 + CA264_03980 0.53 +0.3
923,244 - CA264_03980 0.53 +0.4
923,244 - CA264_03980 0.53 -0.4
923,297 + CA264_03980 0.55 +0.9
923,297 + CA264_03980 0.55 +0.0
923,298 - CA264_03980 0.55 -0.8
923,298 - CA264_03980 0.55 -0.9
923,298 - CA264_03980 0.55 +0.0
923,327 + CA264_03980 0.56 -0.2
923,441 + CA264_03980 0.60 -1.7
923,442 - CA264_03980 0.60 +0.9
923,442 - CA264_03980 0.60 -0.5
923,442 - CA264_03980 0.60 -0.2
923,511 + CA264_03980 0.63 -1.2
923,564 - CA264_03980 0.65 +1.0
923,590 + CA264_03980 0.66 +0.2
923,591 - CA264_03980 0.66 -0.6
923,611 + CA264_03980 0.67 +0.7
923,612 - CA264_03980 0.67 +0.4
923,612 - CA264_03980 0.67 -2.4
923,612 - CA264_03980 0.67 -0.6
923,687 + CA264_03980 0.69 -0.1
923,688 - CA264_03980 0.69 -0.2
923,688 - CA264_03980 0.69 -0.0
923,700 - CA264_03980 0.70 +1.5
923,795 + CA264_03980 0.73 +0.6
923,822 + CA264_03980 0.74 +0.1
923,823 - CA264_03980 0.74 -0.2
923,823 - CA264_03980 0.74 +0.3
923,834 + CA264_03980 0.75 -0.0
923,874 - CA264_03980 0.76 -0.9
923,925 + CA264_03980 0.78 +0.0
923,932 + CA264_03980 0.78 -0.2
923,996 + CA264_03980 0.81 -0.4
923,997 - CA264_03980 0.81 +0.9
924,063 + CA264_03980 0.83 +0.6
924,261 - -0.7
924,365 + +0.1
924,369 - +0.3
924,369 - -0.3
924,371 - -0.1
924,526 + -0.2
924,546 + -0.9
924,547 - +1.2
924,547 - -0.4
924,550 + +0.1
924,551 - -1.0
924,551 - -0.9
924,551 - +0.2
924,551 - +0.0
924,551 - +0.1
924,551 - +0.0
924,551 - -0.1
924,552 + +0.5
924,552 + -0.2
924,658 + +0.3
924,658 + +0.0
924,659 - -0.5
924,662 + +0.3
924,676 - -0.9
924,682 - -0.3
924,682 - -0.3
924,810 - CA264_03985 0.18 +1.2
924,971 - CA264_03985 0.40 -0.4
925,027 + CA264_03985 0.48 -1.1
925,133 + CA264_03985 0.62 +0.2
925,156 + CA264_03985 0.65 -0.4
925,157 - CA264_03985 0.65 +0.1
925,267 + CA264_03985 0.81 +0.0
925,267 + CA264_03985 0.81 -0.5
925,267 + CA264_03985 0.81 -0.4
925,268 - CA264_03985 0.81 -1.5
925,268 - CA264_03985 0.81 +0.5
925,326 - CA264_03985 0.89 +0.0
925,335 + CA264_03985 0.90 -1.5
925,336 - -1.1
925,354 - -0.8
925,354 - -0.8
925,408 + -0.9
925,471 - -0.6
925,483 - +0.3
925,512 + -0.4
925,512 + +0.4
925,512 + -0.6
925,513 - -0.1
925,513 - -0.2
925,520 + -0.1
925,520 + +0.5

Or see this region's nucleotide sequence