Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03675 and CA264_03680 are separated by 108 nucleotides CA264_03680 and CA264_03685 are separated by 108 nucleotides
CA264_03675: CA264_03675 - hypothetical protein, at 858,433 to 859,383
_03675
CA264_03680: CA264_03680 - hypothetical protein, at 859,492 to 859,809
_03680
CA264_03685: CA264_03685 - CusA/CzcA family heavy metal efflux RND transporter, at 859,918 to 864,294
_03685
Position (kb) 859
860 Strain fitness (log2 ratio) -2
-1
0
1
2 at 858.499 kb on + strand at 858.499 kb on + strand at 858.499 kb on + strand at 858.499 kb on + strand at 858.502 kb on + strand at 858.504 kb on + strand at 858.505 kb on - strand at 858.505 kb on - strand at 858.550 kb on + strand, within CA264_03675 at 858.551 kb on - strand, within CA264_03675 at 858.551 kb on - strand, within CA264_03675 at 858.551 kb on - strand, within CA264_03675 at 858.553 kb on - strand, within CA264_03675 at 858.566 kb on - strand, within CA264_03675 at 858.740 kb on + strand, within CA264_03675 at 858.740 kb on + strand, within CA264_03675 at 858.741 kb on - strand, within CA264_03675 at 858.741 kb on - strand, within CA264_03675 at 858.779 kb on - strand, within CA264_03675 at 858.779 kb on - strand, within CA264_03675 at 858.877 kb on + strand, within CA264_03675 at 858.900 kb on + strand, within CA264_03675 at 859.132 kb on + strand, within CA264_03675 at 859.255 kb on + strand, within CA264_03675 at 859.255 kb on + strand, within CA264_03675 at 859.272 kb on + strand, within CA264_03675 at 859.293 kb on + strand at 859.294 kb on - strand at 859.294 kb on - strand at 859.382 kb on - strand at 859.456 kb on - strand at 859.462 kb on - strand at 859.467 kb on + strand at 859.468 kb on - strand at 859.584 kb on + strand, within CA264_03680 at 859.662 kb on + strand, within CA264_03680 at 859.663 kb on - strand, within CA264_03680 at 859.663 kb on - strand, within CA264_03680 at 859.743 kb on - strand, within CA264_03680 at 859.743 kb on - strand, within CA264_03680 at 859.751 kb on - strand, within CA264_03680 at 859.751 kb on - strand, within CA264_03680 at 859.826 kb on + strand at 859.900 kb on + strand at 859.901 kb on - strand at 859.926 kb on + strand at 859.927 kb on - strand at 859.965 kb on - strand at 860.003 kb on - strand at 860.109 kb on + strand at 860.110 kb on - strand at 860.110 kb on - strand at 860.143 kb on - strand at 860.219 kb on + strand at 860.227 kb on + strand at 860.227 kb on + strand at 860.228 kb on - strand at 860.338 kb on + strand at 860.339 kb on - strand at 860.352 kb on - strand at 860.459 kb on + strand, within CA264_03685 at 860.524 kb on + strand, within CA264_03685 at 860.525 kb on - strand, within CA264_03685 at 860.592 kb on + strand, within CA264_03685 at 860.614 kb on + strand, within CA264_03685 at 860.703 kb on - strand, within CA264_03685
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 858,499 + +0.2 858,499 + -0.3 858,499 + -0.6 858,499 + -0.6 858,502 + -0.3 858,504 + +0.5 858,505 - +0.2 858,505 - +0.2 858,550 + CA264_03675 0.12 +0.0 858,551 - CA264_03675 0.12 -0.7 858,551 - CA264_03675 0.12 +0.3 858,551 - CA264_03675 0.12 +0.3 858,553 - CA264_03675 0.13 +1.5 858,566 - CA264_03675 0.14 +0.4 858,740 + CA264_03675 0.32 +0.6 858,740 + CA264_03675 0.32 -0.7 858,741 - CA264_03675 0.32 +0.1 858,741 - CA264_03675 0.32 -1.9 858,779 - CA264_03675 0.36 +0.4 858,779 - CA264_03675 0.36 +0.4 858,877 + CA264_03675 0.47 +0.2 858,900 + CA264_03675 0.49 -0.3 859,132 + CA264_03675 0.74 -0.9 859,255 + CA264_03675 0.86 +0.1 859,255 + CA264_03675 0.86 +0.7 859,272 + CA264_03675 0.88 +0.7 859,293 + -0.5 859,294 - +0.9 859,294 - +0.9 859,382 - -1.2 859,456 - +0.9 859,462 - +0.2 859,467 + -1.0 859,468 - -0.4 859,584 + CA264_03680 0.29 -1.7 859,662 + CA264_03680 0.53 -0.4 859,663 - CA264_03680 0.54 +0.1 859,663 - CA264_03680 0.54 -2.5 859,743 - CA264_03680 0.79 +0.8 859,743 - CA264_03680 0.79 -0.3 859,751 - CA264_03680 0.81 -0.1 859,751 - CA264_03680 0.81 -0.1 859,826 + -0.3 859,900 + -2.2 859,901 - -0.2 859,926 + -0.5 859,927 - -0.3 859,965 - -1.0 860,003 - -0.7 860,109 + -2.1 860,110 - -1.4 860,110 - +0.5 860,143 - +0.1 860,219 + -0.3 860,227 + +0.0 860,227 + +2.1 860,228 - -0.3 860,338 + -0.4 860,339 - -1.1 860,352 - +0.2 860,459 + CA264_03685 0.12 +0.4 860,524 + CA264_03685 0.14 -0.5 860,525 - CA264_03685 0.14 -0.1 860,592 + CA264_03685 0.15 -1.0 860,614 + CA264_03685 0.16 -1.2 860,703 - CA264_03685 0.18 -0.4
Or see this region's nucleotide sequence