Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02075

Experiment: marine_broth_2216 with Chloride 500 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02070 and CA264_02075 are separated by 93 nucleotidesCA264_02075 and CA264_02080 are separated by 68 nucleotidesCA264_02080 and CA264_02085 are separated by 82 nucleotides CA264_02070: CA264_02070 - LLM class flavin-dependent oxidoreductase, at 478,207 to 479,238 _02070 CA264_02075: CA264_02075 - hypothetical protein, at 479,332 to 480,345 _02075 CA264_02080: CA264_02080 - hypothetical protein, at 480,414 to 480,782 _02080 CA264_02085: CA264_02085 - hypothetical protein, at 480,865 to 481,812 _02085 Position (kb) 479 480 481Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 478.493 kb on + strand, within CA264_02070at 478.565 kb on + strand, within CA264_02070at 478.566 kb on - strand, within CA264_02070at 478.610 kb on - strand, within CA264_02070at 478.661 kb on + strand, within CA264_02070at 478.675 kb on + strand, within CA264_02070at 478.676 kb on - strand, within CA264_02070at 478.676 kb on - strand, within CA264_02070at 478.676 kb on - strand, within CA264_02070at 478.677 kb on + strand, within CA264_02070at 478.727 kb on - strand, within CA264_02070at 478.755 kb on + strand, within CA264_02070at 478.788 kb on - strand, within CA264_02070at 479.071 kb on - strand, within CA264_02070at 479.071 kb on - strand, within CA264_02070at 479.173 kb on + strandat 479.173 kb on + strandat 479.175 kb on + strandat 479.175 kb on + strandat 479.175 kb on + strandat 479.175 kb on + strandat 479.175 kb on + strandat 479.175 kb on + strandat 479.176 kb on - strandat 479.176 kb on - strandat 479.205 kb on + strandat 479.206 kb on - strandat 479.250 kb on + strandat 479.251 kb on - strandat 479.254 kb on + strandat 479.358 kb on - strandat 479.358 kb on - strandat 479.376 kb on + strandat 479.380 kb on - strandat 479.412 kb on - strandat 479.431 kb on + strandat 479.431 kb on + strandat 479.431 kb on + strandat 479.431 kb on + strandat 479.431 kb on + strandat 479.432 kb on - strandat 479.432 kb on - strandat 479.452 kb on + strand, within CA264_02075at 479.452 kb on + strand, within CA264_02075at 479.462 kb on + strand, within CA264_02075at 479.525 kb on + strand, within CA264_02075at 479.526 kb on - strand, within CA264_02075at 479.594 kb on - strand, within CA264_02075at 479.613 kb on - strand, within CA264_02075at 479.613 kb on - strand, within CA264_02075at 479.613 kb on - strand, within CA264_02075at 479.613 kb on - strand, within CA264_02075at 479.616 kb on + strand, within CA264_02075at 479.681 kb on + strand, within CA264_02075at 479.681 kb on + strand, within CA264_02075at 479.681 kb on + strand, within CA264_02075at 479.682 kb on - strand, within CA264_02075at 479.738 kb on - strand, within CA264_02075at 479.748 kb on + strand, within CA264_02075at 479.823 kb on + strand, within CA264_02075at 479.824 kb on - strand, within CA264_02075at 479.954 kb on - strand, within CA264_02075at 479.958 kb on + strand, within CA264_02075at 479.958 kb on + strand, within CA264_02075at 479.960 kb on + strand, within CA264_02075at 479.974 kb on - strand, within CA264_02075at 480.096 kb on - strand, within CA264_02075at 480.096 kb on - strand, within CA264_02075at 480.119 kb on + strand, within CA264_02075at 480.120 kb on - strand, within CA264_02075at 480.137 kb on + strand, within CA264_02075at 480.138 kb on - strand, within CA264_02075at 480.138 kb on - strand, within CA264_02075at 480.195 kb on - strand, within CA264_02075at 480.242 kb on + strand, within CA264_02075at 480.242 kb on + strand, within CA264_02075at 480.243 kb on - strand, within CA264_02075at 480.243 kb on - strand, within CA264_02075at 480.243 kb on - strand, within CA264_02075at 480.275 kb on + strandat 480.278 kb on + strandat 480.334 kb on + strandat 480.415 kb on + strandat 480.416 kb on - strandat 480.444 kb on - strandat 480.444 kb on - strandat 480.493 kb on - strand, within CA264_02080at 480.785 kb on + strandat 480.785 kb on + strandat 480.786 kb on - strandat 480.786 kb on - strandat 480.787 kb on + strandat 480.787 kb on + strandat 480.787 kb on + strandat 480.787 kb on + strandat 480.787 kb on + strandat 480.788 kb on - strandat 480.819 kb on + strandat 480.819 kb on + strandat 480.819 kb on + strandat 480.820 kb on - strandat 480.820 kb on - strandat 480.840 kb on + strandat 480.841 kb on - strandat 480.874 kb on - strandat 480.878 kb on + strandat 480.892 kb on + strandat 480.893 kb on - strandat 480.912 kb on + strandat 480.913 kb on - strandat 480.923 kb on + strandat 480.923 kb on + strandat 480.929 kb on - strandat 480.929 kb on - strandat 480.961 kb on + strand, within CA264_02085at 480.961 kb on + strand, within CA264_02085at 480.964 kb on - strand, within CA264_02085at 480.984 kb on + strand, within CA264_02085at 480.990 kb on + strand, within CA264_02085at 481.003 kb on + strand, within CA264_02085at 481.003 kb on + strand, within CA264_02085at 481.003 kb on + strand, within CA264_02085at 481.114 kb on - strand, within CA264_02085at 481.134 kb on + strand, within CA264_02085at 481.171 kb on + strand, within CA264_02085at 481.212 kb on + strand, within CA264_02085at 481.218 kb on - strand, within CA264_02085at 481.221 kb on + strand, within CA264_02085at 481.222 kb on - strand, within CA264_02085at 481.233 kb on + strand, within CA264_02085at 481.236 kb on + strand, within CA264_02085at 481.238 kb on + strand, within CA264_02085at 481.238 kb on + strand, within CA264_02085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
remove
478,493 + CA264_02070 0.28 +3.0
478,565 + CA264_02070 0.35 -0.5
478,566 - CA264_02070 0.35 +0.2
478,610 - CA264_02070 0.39 -0.7
478,661 + CA264_02070 0.44 -1.3
478,675 + CA264_02070 0.45 +0.7
478,676 - CA264_02070 0.45 +0.9
478,676 - CA264_02070 0.45 -0.3
478,676 - CA264_02070 0.45 +1.0
478,677 + CA264_02070 0.46 +0.3
478,727 - CA264_02070 0.50 +0.6
478,755 + CA264_02070 0.53 -0.2
478,788 - CA264_02070 0.56 +0.6
479,071 - CA264_02070 0.84 -1.6
479,071 - CA264_02070 0.84 +0.1
479,173 + +0.0
479,173 + -2.8
479,175 + -0.9
479,175 + +0.3
479,175 + -0.4
479,175 + -0.8
479,175 + -1.1
479,175 + +0.0
479,176 - -0.7
479,176 - +0.1
479,205 + -1.0
479,206 - +0.3
479,250 + +0.2
479,251 - +1.0
479,254 + +0.0
479,358 - -1.3
479,358 - +0.1
479,376 + +0.5
479,380 - -0.2
479,412 - -0.6
479,431 + -0.4
479,431 + +1.4
479,431 + +0.2
479,431 + +1.0
479,431 + -0.2
479,432 - -0.4
479,432 - +0.7
479,452 + CA264_02075 0.12 -0.4
479,452 + CA264_02075 0.12 +1.2
479,462 + CA264_02075 0.13 +0.2
479,525 + CA264_02075 0.19 -0.5
479,526 - CA264_02075 0.19 -0.2
479,594 - CA264_02075 0.26 +0.0
479,613 - CA264_02075 0.28 -0.2
479,613 - CA264_02075 0.28 -0.1
479,613 - CA264_02075 0.28 -0.1
479,613 - CA264_02075 0.28 -0.3
479,616 + CA264_02075 0.28 -0.3
479,681 + CA264_02075 0.34 +0.7
479,681 + CA264_02075 0.34 +0.3
479,681 + CA264_02075 0.34 +0.7
479,682 - CA264_02075 0.35 -0.3
479,738 - CA264_02075 0.40 +1.0
479,748 + CA264_02075 0.41 -0.4
479,823 + CA264_02075 0.48 +2.0
479,824 - CA264_02075 0.49 +0.6
479,954 - CA264_02075 0.61 -1.2
479,958 + CA264_02075 0.62 -0.1
479,958 + CA264_02075 0.62 +0.4
479,960 + CA264_02075 0.62 -0.1
479,974 - CA264_02075 0.63 +2.3
480,096 - CA264_02075 0.75 +0.1
480,096 - CA264_02075 0.75 -2.0
480,119 + CA264_02075 0.78 -0.9
480,120 - CA264_02075 0.78 +1.8
480,137 + CA264_02075 0.79 +0.8
480,138 - CA264_02075 0.79 +0.1
480,138 - CA264_02075 0.79 -0.2
480,195 - CA264_02075 0.85 -1.6
480,242 + CA264_02075 0.90 +1.0
480,242 + CA264_02075 0.90 -1.0
480,243 - CA264_02075 0.90 +0.0
480,243 - CA264_02075 0.90 -0.4
480,243 - CA264_02075 0.90 -1.1
480,275 + -0.2
480,278 + +1.0
480,334 + +0.6
480,415 + -0.6
480,416 - -0.4
480,444 - +0.0
480,444 - -0.2
480,493 - CA264_02080 0.21 +1.3
480,785 + -0.1
480,785 + -1.4
480,786 - +0.4
480,786 - -0.2
480,787 + +0.4
480,787 + -1.6
480,787 + +0.9
480,787 + +0.5
480,787 + -0.3
480,788 - +0.6
480,819 + +0.3
480,819 + +0.6
480,819 + -0.1
480,820 - -0.5
480,820 - -0.7
480,840 + -0.0
480,841 - +1.3
480,874 - -0.4
480,878 + -0.2
480,892 + -0.7
480,893 - -0.5
480,912 + +0.1
480,913 - -0.6
480,923 + +1.6
480,923 + +0.4
480,929 - -0.0
480,929 - -1.0
480,961 + CA264_02085 0.10 -0.3
480,961 + CA264_02085 0.10 +0.4
480,964 - CA264_02085 0.10 -1.0
480,984 + CA264_02085 0.13 +0.3
480,990 + CA264_02085 0.13 -0.7
481,003 + CA264_02085 0.15 -1.0
481,003 + CA264_02085 0.15 -1.7
481,003 + CA264_02085 0.15 +0.6
481,114 - CA264_02085 0.26 -0.4
481,134 + CA264_02085 0.28 +2.0
481,171 + CA264_02085 0.32 -0.5
481,212 + CA264_02085 0.37 -0.2
481,218 - CA264_02085 0.37 +0.4
481,221 + CA264_02085 0.38 -0.2
481,222 - CA264_02085 0.38 +0.2
481,233 + CA264_02085 0.39 +0.7
481,236 + CA264_02085 0.39 +0.1
481,238 + CA264_02085 0.39 +1.4
481,238 + CA264_02085 0.39 +1.0

Or see this region's nucleotide sequence