Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01845

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01840 and CA264_01845 are separated by 106 nucleotidesCA264_01845 and CA264_01850 are separated by 194 nucleotidesCA264_01850 and CA264_01855 are separated by 274 nucleotides CA264_01840: CA264_01840 - pyridine nucleotide-disulfide oxidoreductase, at 430,663 to 431,721 _01840 CA264_01845: CA264_01845 - aldo/keto reductase, at 431,828 to 432,799 _01845 CA264_01850: CA264_01850 - hypothetical protein, at 432,994 to 433,482 _01850 CA264_01855: CA264_01855 - carbonic anhydrase, at 433,757 to 434,383 _01855 Position (kb) 431 432 433Strain fitness (log2 ratio) -2 -1 0 1 2 3at 430.881 kb on + strand, within CA264_01840at 430.943 kb on + strand, within CA264_01840at 430.943 kb on + strand, within CA264_01840at 430.944 kb on - strand, within CA264_01840at 431.019 kb on + strand, within CA264_01840at 431.020 kb on - strand, within CA264_01840at 431.033 kb on + strand, within CA264_01840at 431.034 kb on - strand, within CA264_01840at 431.034 kb on - strand, within CA264_01840at 431.047 kb on + strand, within CA264_01840at 431.072 kb on + strand, within CA264_01840at 431.075 kb on + strand, within CA264_01840at 431.076 kb on - strand, within CA264_01840at 431.089 kb on + strand, within CA264_01840at 431.099 kb on - strand, within CA264_01840at 431.149 kb on + strand, within CA264_01840at 431.150 kb on - strand, within CA264_01840at 431.215 kb on + strand, within CA264_01840at 431.216 kb on - strand, within CA264_01840at 431.219 kb on - strand, within CA264_01840at 431.259 kb on - strand, within CA264_01840at 431.289 kb on - strand, within CA264_01840at 431.307 kb on - strand, within CA264_01840at 431.318 kb on + strand, within CA264_01840at 431.319 kb on - strand, within CA264_01840at 431.329 kb on + strand, within CA264_01840at 431.329 kb on + strand, within CA264_01840at 431.330 kb on - strand, within CA264_01840at 431.363 kb on + strand, within CA264_01840at 431.363 kb on + strand, within CA264_01840at 431.364 kb on - strand, within CA264_01840at 431.366 kb on + strand, within CA264_01840at 431.366 kb on + strand, within CA264_01840at 431.367 kb on - strand, within CA264_01840at 431.428 kb on + strand, within CA264_01840at 431.504 kb on + strand, within CA264_01840at 431.658 kb on - strandat 431.735 kb on + strandat 431.736 kb on - strandat 431.781 kb on - strandat 431.821 kb on + strandat 431.829 kb on + strandat 431.829 kb on + strandat 431.830 kb on - strandat 431.873 kb on + strandat 431.874 kb on - strandat 432.093 kb on + strand, within CA264_01845at 432.094 kb on - strand, within CA264_01845at 432.181 kb on + strand, within CA264_01845at 432.181 kb on + strand, within CA264_01845at 432.182 kb on - strand, within CA264_01845at 432.249 kb on + strand, within CA264_01845at 432.347 kb on - strand, within CA264_01845at 432.510 kb on - strand, within CA264_01845at 432.514 kb on + strand, within CA264_01845at 432.514 kb on + strand, within CA264_01845at 432.539 kb on - strand, within CA264_01845at 432.570 kb on + strand, within CA264_01845at 432.571 kb on - strand, within CA264_01845at 432.674 kb on + strand, within CA264_01845at 432.680 kb on + strand, within CA264_01845at 432.752 kb on + strandat 432.792 kb on + strandat 432.812 kb on + strandat 432.813 kb on - strandat 432.813 kb on - strandat 432.901 kb on + strandat 432.995 kb on + strandat 433.010 kb on - strandat 433.010 kb on - strandat 433.047 kb on + strand, within CA264_01850at 433.068 kb on + strand, within CA264_01850at 433.068 kb on + strand, within CA264_01850at 433.068 kb on + strand, within CA264_01850at 433.068 kb on + strand, within CA264_01850at 433.068 kb on + strand, within CA264_01850at 433.069 kb on - strand, within CA264_01850at 433.141 kb on + strand, within CA264_01850at 433.146 kb on + strand, within CA264_01850at 433.147 kb on - strand, within CA264_01850at 433.361 kb on + strand, within CA264_01850at 433.475 kb on - strandat 433.478 kb on - strandat 433.478 kb on - strandat 433.478 kb on - strandat 433.482 kb on + strandat 433.483 kb on - strandat 433.485 kb on - strandat 433.485 kb on - strandat 433.485 kb on - strandat 433.530 kb on - strandat 433.530 kb on - strandat 433.620 kb on - strandat 433.623 kb on + strandat 433.633 kb on + strandat 433.634 kb on - strandat 433.675 kb on - strandat 433.689 kb on - strandat 433.759 kb on - strandat 433.768 kb on - strandat 433.797 kb on + strandat 433.798 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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430,881 + CA264_01840 0.21 +0.1
430,943 + CA264_01840 0.26 +0.4
430,943 + CA264_01840 0.26 -1.1
430,944 - CA264_01840 0.27 -0.6
431,019 + CA264_01840 0.34 -0.1
431,020 - CA264_01840 0.34 +0.6
431,033 + CA264_01840 0.35 -0.4
431,034 - CA264_01840 0.35 -0.3
431,034 - CA264_01840 0.35 -0.1
431,047 + CA264_01840 0.36 -0.1
431,072 + CA264_01840 0.39 +0.0
431,075 + CA264_01840 0.39 -0.0
431,076 - CA264_01840 0.39 -0.4
431,089 + CA264_01840 0.40 -0.1
431,099 - CA264_01840 0.41 +1.0
431,149 + CA264_01840 0.46 -1.9
431,150 - CA264_01840 0.46 +0.7
431,215 + CA264_01840 0.52 -0.4
431,216 - CA264_01840 0.52 +0.9
431,219 - CA264_01840 0.53 -0.5
431,259 - CA264_01840 0.56 +0.3
431,289 - CA264_01840 0.59 -0.1
431,307 - CA264_01840 0.61 +3.0
431,318 + CA264_01840 0.62 +0.4
431,319 - CA264_01840 0.62 -1.1
431,329 + CA264_01840 0.63 +0.4
431,329 + CA264_01840 0.63 -0.7
431,330 - CA264_01840 0.63 -2.1
431,363 + CA264_01840 0.66 +0.0
431,363 + CA264_01840 0.66 +0.1
431,364 - CA264_01840 0.66 +0.0
431,366 + CA264_01840 0.66 -0.1
431,366 + CA264_01840 0.66 -0.0
431,367 - CA264_01840 0.66 +0.6
431,428 + CA264_01840 0.72 +0.7
431,504 + CA264_01840 0.79 -0.6
431,658 - +0.1
431,735 + -2.3
431,736 - -0.2
431,781 - +0.4
431,821 + +0.0
431,829 + -1.0
431,829 + -0.1
431,830 - +0.8
431,873 + -0.4
431,874 - +0.0
432,093 + CA264_01845 0.27 +1.3
432,094 - CA264_01845 0.27 -0.3
432,181 + CA264_01845 0.36 -1.3
432,181 + CA264_01845 0.36 -0.8
432,182 - CA264_01845 0.36 -0.6
432,249 + CA264_01845 0.43 -1.1
432,347 - CA264_01845 0.53 +0.0
432,510 - CA264_01845 0.70 +0.1
432,514 + CA264_01845 0.71 +1.0
432,514 + CA264_01845 0.71 +0.7
432,539 - CA264_01845 0.73 -0.1
432,570 + CA264_01845 0.76 +0.4
432,571 - CA264_01845 0.76 -0.5
432,674 + CA264_01845 0.87 -0.2
432,680 + CA264_01845 0.88 -0.9
432,752 + +0.0
432,792 + +1.0
432,812 + +0.1
432,813 - +0.7
432,813 - -0.2
432,901 + +0.3
432,995 + -0.0
433,010 - -2.0
433,010 - +1.4
433,047 + CA264_01850 0.11 -0.3
433,068 + CA264_01850 0.15 +1.7
433,068 + CA264_01850 0.15 -0.6
433,068 + CA264_01850 0.15 +0.8
433,068 + CA264_01850 0.15 -0.6
433,068 + CA264_01850 0.15 -0.6
433,069 - CA264_01850 0.15 -0.3
433,141 + CA264_01850 0.30 -0.3
433,146 + CA264_01850 0.31 +0.2
433,147 - CA264_01850 0.31 +0.3
433,361 + CA264_01850 0.75 +1.0
433,475 - -0.3
433,478 - -0.7
433,478 - -0.4
433,478 - -0.1
433,482 + -0.3
433,483 - -0.4
433,485 - +0.8
433,485 - +0.7
433,485 - -0.4
433,530 - -0.3
433,530 - -0.1
433,620 - +0.0
433,623 + -0.3
433,633 + -0.6
433,634 - +0.0
433,675 - +1.0
433,689 - +1.0
433,759 - +2.0
433,768 - +0.4
433,797 + +0.4
433,798 - -1.2

Or see this region's nucleotide sequence