Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01820 and CA264_01825 are separated by 185 nucleotides CA264_01825 and CA264_01830 are separated by 170 nucleotides CA264_01830 and CA264_01835 are separated by 126 nucleotides CA264_01835 and CA264_01840 are separated by 240 nucleotides
CA264_01820: CA264_01820 - hypothetical protein, at 427,257 to 427,988
_01820
CA264_01825: CA264_01825 - hypothetical protein, at 428,174 to 428,425
_01825
CA264_01830: CA264_01830 - Bcr/CflA family drug resistance efflux transporter, at 428,596 to 429,846
_01830
CA264_01835: CA264_01835 - GNAT family N-acetyltransferase, at 429,973 to 430,422
_01835
CA264_01840: CA264_01840 - pyridine nucleotide-disulfide oxidoreductase, at 430,663 to 431,721
_01840
Position (kb) 428
429
430 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 427.689 kb on + strand, within CA264_01820 at 427.689 kb on + strand, within CA264_01820 at 427.690 kb on - strand, within CA264_01820 at 427.690 kb on - strand, within CA264_01820 at 427.723 kb on + strand, within CA264_01820 at 427.814 kb on + strand, within CA264_01820 at 427.899 kb on - strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.942 kb on - strand at 427.960 kb on + strand at 427.984 kb on - strand at 427.984 kb on - strand at 427.999 kb on + strand at 428.000 kb on - strand at 428.050 kb on - strand at 428.234 kb on + strand, within CA264_01825 at 428.474 kb on + strand at 428.506 kb on - strand at 428.506 kb on - strand at 428.531 kb on - strand at 428.531 kb on - strand at 428.594 kb on - strand at 428.594 kb on - strand at 428.594 kb on - strand at 428.596 kb on - strand at 428.612 kb on - strand at 428.620 kb on - strand at 428.629 kb on - strand at 428.674 kb on + strand at 428.716 kb on - strand at 428.812 kb on - strand, within CA264_01830 at 428.872 kb on - strand, within CA264_01830 at 428.907 kb on + strand, within CA264_01830 at 428.907 kb on + strand, within CA264_01830 at 428.908 kb on - strand, within CA264_01830 at 428.910 kb on - strand, within CA264_01830 at 428.910 kb on - strand, within CA264_01830 at 428.910 kb on - strand, within CA264_01830 at 429.006 kb on + strand, within CA264_01830 at 429.059 kb on + strand, within CA264_01830 at 429.059 kb on + strand, within CA264_01830 at 429.090 kb on + strand, within CA264_01830 at 429.090 kb on + strand, within CA264_01830 at 429.091 kb on - strand, within CA264_01830 at 429.095 kb on + strand, within CA264_01830 at 429.105 kb on + strand, within CA264_01830 at 429.106 kb on - strand, within CA264_01830 at 429.242 kb on - strand, within CA264_01830 at 429.341 kb on - strand, within CA264_01830 at 429.393 kb on + strand, within CA264_01830 at 429.393 kb on + strand, within CA264_01830 at 429.393 kb on + strand, within CA264_01830 at 429.393 kb on + strand, within CA264_01830 at 429.415 kb on + strand, within CA264_01830 at 429.416 kb on - strand, within CA264_01830 at 429.417 kb on + strand, within CA264_01830 at 429.418 kb on - strand, within CA264_01830 at 429.490 kb on + strand, within CA264_01830 at 429.491 kb on - strand, within CA264_01830 at 429.494 kb on - strand, within CA264_01830 at 429.511 kb on + strand, within CA264_01830 at 429.512 kb on - strand, within CA264_01830 at 429.696 kb on + strand, within CA264_01830 at 429.697 kb on - strand, within CA264_01830 at 429.712 kb on - strand, within CA264_01830 at 429.735 kb on + strand at 429.811 kb on - strand at 429.825 kb on - strand at 429.844 kb on + strand at 429.845 kb on - strand at 429.876 kb on - strand at 429.992 kb on - strand at 430.034 kb on - strand, within CA264_01835 at 430.211 kb on + strand, within CA264_01835 at 430.265 kb on + strand, within CA264_01835 at 430.266 kb on - strand, within CA264_01835 at 430.267 kb on + strand, within CA264_01835 at 430.267 kb on + strand, within CA264_01835 at 430.383 kb on + strand at 430.493 kb on - strand at 430.523 kb on + strand at 430.567 kb on - strand at 430.632 kb on + strand at 430.632 kb on + strand at 430.633 kb on - strand at 430.664 kb on + strand at 430.675 kb on + strand at 430.675 kb on + strand at 430.675 kb on + strand at 430.676 kb on - strand at 430.734 kb on + strand at 430.769 kb on - strand, within CA264_01840
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 427,689 + CA264_01820 0.59 +0.0 427,689 + CA264_01820 0.59 -0.6 427,690 - CA264_01820 0.59 -0.5 427,690 - CA264_01820 0.59 +0.3 427,723 + CA264_01820 0.64 -0.9 427,814 + CA264_01820 0.76 -2.4 427,899 - CA264_01820 0.88 +0.0 427,900 + CA264_01820 0.88 +0.0 427,900 + CA264_01820 0.88 +1.0 427,900 + CA264_01820 0.88 +1.0 427,900 + CA264_01820 0.88 +1.0 427,942 - +1.8 427,960 + -0.5 427,984 - -3.2 427,984 - -0.5 427,999 + +1.0 428,000 - +1.3 428,050 - -0.2 428,234 + CA264_01825 0.24 +1.0 428,474 + +1.0 428,506 - +1.0 428,506 - +1.0 428,531 - -1.4 428,531 - +0.4 428,594 - -0.2 428,594 - -0.1 428,594 - +2.0 428,596 - -0.8 428,612 - -0.2 428,620 - -0.3 428,629 - +0.3 428,674 + -1.6 428,716 - +1.0 428,812 - CA264_01830 0.17 -0.5 428,872 - CA264_01830 0.22 +0.7 428,907 + CA264_01830 0.25 -0.3 428,907 + CA264_01830 0.25 +2.0 428,908 - CA264_01830 0.25 -0.4 428,910 - CA264_01830 0.25 -1.8 428,910 - CA264_01830 0.25 -0.5 428,910 - CA264_01830 0.25 +0.2 429,006 + CA264_01830 0.33 -1.0 429,059 + CA264_01830 0.37 -0.6 429,059 + CA264_01830 0.37 +0.1 429,090 + CA264_01830 0.39 +1.0 429,090 + CA264_01830 0.39 -0.1 429,091 - CA264_01830 0.40 +0.5 429,095 + CA264_01830 0.40 -0.5 429,105 + CA264_01830 0.41 -0.3 429,106 - CA264_01830 0.41 -0.1 429,242 - CA264_01830 0.52 +1.0 429,341 - CA264_01830 0.60 -1.6 429,393 + CA264_01830 0.64 -0.3 429,393 + CA264_01830 0.64 +1.8 429,393 + CA264_01830 0.64 +1.6 429,393 + CA264_01830 0.64 -0.3 429,415 + CA264_01830 0.65 -0.3 429,416 - CA264_01830 0.66 +0.3 429,417 + CA264_01830 0.66 -0.7 429,418 - CA264_01830 0.66 -0.8 429,490 + CA264_01830 0.71 +0.4 429,491 - CA264_01830 0.72 -1.3 429,494 - CA264_01830 0.72 -0.1 429,511 + CA264_01830 0.73 -0.3 429,512 - CA264_01830 0.73 +0.2 429,696 + CA264_01830 0.88 -1.1 429,697 - CA264_01830 0.88 +1.0 429,712 - CA264_01830 0.89 -0.1 429,735 + -0.6 429,811 - +0.4 429,825 - +0.4 429,844 + -0.8 429,845 - +0.6 429,876 - +1.4 429,992 - -0.5 430,034 - CA264_01835 0.14 +0.4 430,211 + CA264_01835 0.53 -0.1 430,265 + CA264_01835 0.65 +0.4 430,266 - CA264_01835 0.65 +0.6 430,267 + CA264_01835 0.65 +0.3 430,267 + CA264_01835 0.65 -0.2 430,383 + -0.2 430,493 - +0.3 430,523 + +0.0 430,567 - -0.2 430,632 + -0.7 430,632 + -1.3 430,633 - +0.1 430,664 + +1.2 430,675 + -0.3 430,675 + -1.8 430,675 + -0.6 430,676 - -0.4 430,734 + +0.8 430,769 - CA264_01840 0.10 -0.0
Or see this region's nucleotide sequence