Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01720 and CA264_01725 are separated by 2 nucleotides CA264_01725 and CA264_01730 are separated by 147 nucleotides CA264_01730 and CA264_01735 are separated by 206 nucleotides
CA264_01720: CA264_01720 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6, at 402,020 to 402,547
_01720
CA264_01725: CA264_01725 - NADH-quinone oxidoreductase subunit K, at 402,550 to 402,864
_01725
CA264_01730: CA264_01730 - NADH-quinone oxidoreductase subunit L, at 403,012 to 405,156
_01730
CA264_01735: CA264_01735 - oxidoreductase, at 405,363 to 407,105
_01735
Position (kb) 403
404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 402.030 kb on + strand at 402.030 kb on + strand at 402.031 kb on - strand at 402.031 kb on - strand at 402.091 kb on - strand, within CA264_01720 at 402.241 kb on + strand, within CA264_01720 at 402.289 kb on - strand, within CA264_01720 at 402.298 kb on - strand, within CA264_01720 at 402.323 kb on - strand, within CA264_01720 at 402.325 kb on - strand, within CA264_01720 at 402.341 kb on + strand, within CA264_01720 at 402.343 kb on + strand, within CA264_01720 at 402.343 kb on + strand, within CA264_01720 at 402.343 kb on + strand, within CA264_01720 at 402.344 kb on - strand, within CA264_01720 at 402.346 kb on + strand, within CA264_01720 at 402.346 kb on + strand, within CA264_01720 at 402.352 kb on + strand, within CA264_01720 at 402.353 kb on - strand, within CA264_01720 at 402.462 kb on + strand, within CA264_01720 at 402.463 kb on - strand, within CA264_01720 at 402.519 kb on - strand at 402.519 kb on - strand at 402.520 kb on + strand at 402.520 kb on + strand at 402.521 kb on - strand at 402.574 kb on - strand at 402.579 kb on - strand at 402.585 kb on - strand, within CA264_01725 at 402.815 kb on - strand, within CA264_01725 at 402.862 kb on + strand at 402.862 kb on + strand at 402.880 kb on + strand at 402.880 kb on + strand at 402.880 kb on + strand at 402.880 kb on + strand at 402.897 kb on + strand at 402.897 kb on + strand at 402.897 kb on + strand at 402.901 kb on + strand at 402.917 kb on + strand at 402.917 kb on + strand at 402.917 kb on + strand at 402.918 kb on - strand at 402.918 kb on - strand at 402.923 kb on + strand at 402.953 kb on + strand at 402.972 kb on - strand at 403.002 kb on - strand at 403.002 kb on - strand at 403.084 kb on + strand at 403.128 kb on + strand at 403.129 kb on - strand at 403.152 kb on + strand at 403.199 kb on - strand at 403.241 kb on + strand, within CA264_01730 at 403.364 kb on - strand, within CA264_01730 at 403.402 kb on - strand, within CA264_01730 at 403.410 kb on - strand, within CA264_01730 at 403.544 kb on + strand, within CA264_01730 at 403.563 kb on - strand, within CA264_01730 at 403.592 kb on - strand, within CA264_01730 at 403.626 kb on - strand, within CA264_01730 at 403.669 kb on - strand, within CA264_01730 at 403.707 kb on - strand, within CA264_01730 at 403.713 kb on - strand, within CA264_01730 at 403.753 kb on - strand, within CA264_01730 at 403.763 kb on + strand, within CA264_01730 at 403.842 kb on - strand, within CA264_01730 at 403.871 kb on + strand, within CA264_01730 at 403.873 kb on + strand, within CA264_01730 at 404.010 kb on + strand, within CA264_01730 at 404.031 kb on + strand, within CA264_01730 at 404.143 kb on - strand, within CA264_01730 at 404.143 kb on - strand, within CA264_01730 at 404.230 kb on - strand, within CA264_01730 at 404.243 kb on - strand, within CA264_01730 at 404.267 kb on + strand, within CA264_01730 at 404.369 kb on - strand, within CA264_01730 at 404.370 kb on + strand, within CA264_01730 at 404.371 kb on - strand, within CA264_01730 at 404.470 kb on - strand, within CA264_01730 at 404.483 kb on + strand, within CA264_01730 at 404.615 kb on + strand, within CA264_01730 at 404.615 kb on + strand, within CA264_01730 at 404.616 kb on - strand, within CA264_01730 at 404.630 kb on + strand, within CA264_01730 at 404.630 kb on + strand, within CA264_01730 at 404.643 kb on + strand, within CA264_01730 at 404.728 kb on - strand, within CA264_01730 at 404.732 kb on + strand, within CA264_01730 at 404.772 kb on + strand, within CA264_01730 at 404.796 kb on - strand, within CA264_01730 at 404.822 kb on + strand, within CA264_01730 at 404.970 kb on - strand at 405.137 kb on + strand at 405.139 kb on + strand at 405.141 kb on + strand at 405.141 kb on + strand at 405.142 kb on - strand at 405.142 kb on - strand at 405.142 kb on - strand at 405.160 kb on + strand at 405.214 kb on - strand at 405.216 kb on + strand at 405.217 kb on - strand at 405.217 kb on - strand at 405.228 kb on + strand at 405.228 kb on + strand at 405.245 kb on + strand at 405.246 kb on - strand at 405.246 kb on - strand at 405.264 kb on + strand at 405.264 kb on + strand at 405.264 kb on + strand at 405.289 kb on - strand at 405.329 kb on + strand at 405.329 kb on + strand at 405.508 kb on - strand at 405.572 kb on - strand, within CA264_01735 at 405.741 kb on + strand, within CA264_01735 at 405.741 kb on + strand, within CA264_01735 at 405.785 kb on - strand, within CA264_01735 at 405.845 kb on - strand, within CA264_01735 at 405.845 kb on - strand, within CA264_01735 at 405.885 kb on - strand, within CA264_01735 at 405.893 kb on + strand, within CA264_01735 at 405.900 kb on - strand, within CA264_01735
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 402,030 + -0.5 402,030 + -0.8 402,031 - +0.2 402,031 - -1.0 402,091 - CA264_01720 0.13 +0.0 402,241 + CA264_01720 0.42 -1.9 402,289 - CA264_01720 0.51 +0.0 402,298 - CA264_01720 0.53 +1.0 402,323 - CA264_01720 0.57 -0.7 402,325 - CA264_01720 0.58 +0.0 402,341 + CA264_01720 0.61 -2.4 402,343 + CA264_01720 0.61 -2.4 402,343 + CA264_01720 0.61 +1.6 402,343 + CA264_01720 0.61 -1.5 402,344 - CA264_01720 0.61 -2.0 402,346 + CA264_01720 0.62 -1.0 402,346 + CA264_01720 0.62 -2.4 402,352 + CA264_01720 0.63 +0.5 402,353 - CA264_01720 0.63 -0.8 402,462 + CA264_01720 0.84 -1.8 402,463 - CA264_01720 0.84 -1.0 402,519 - -0.8 402,519 - -1.4 402,520 + -0.8 402,520 + -1.5 402,521 - -2.7 402,574 - -0.4 402,579 - -0.3 402,585 - CA264_01725 0.11 -1.7 402,815 - CA264_01725 0.84 -2.3 402,862 + -0.7 402,862 + -1.5 402,880 + -0.6 402,880 + -0.3 402,880 + +1.5 402,880 + -0.1 402,897 + +0.1 402,897 + +0.5 402,897 + -0.5 402,901 + -1.0 402,917 + -0.4 402,917 + -1.1 402,917 + -0.1 402,918 - +0.2 402,918 - -0.4 402,923 + -0.1 402,953 + -0.1 402,972 - -0.6 403,002 - -0.6 403,002 - -0.5 403,084 + -2.3 403,128 + -3.1 403,129 - +0.0 403,152 + +1.0 403,199 - -1.3 403,241 + CA264_01730 0.11 -0.5 403,364 - CA264_01730 0.16 -1.0 403,402 - CA264_01730 0.18 -1.4 403,410 - CA264_01730 0.19 -0.6 403,544 + CA264_01730 0.25 -1.8 403,563 - CA264_01730 0.26 +0.0 403,592 - CA264_01730 0.27 +1.0 403,626 - CA264_01730 0.29 -1.6 403,669 - CA264_01730 0.31 -1.7 403,707 - CA264_01730 0.32 -1.8 403,713 - CA264_01730 0.33 -2.5 403,753 - CA264_01730 0.35 -1.6 403,763 + CA264_01730 0.35 -0.7 403,842 - CA264_01730 0.39 +0.0 403,871 + CA264_01730 0.40 -1.8 403,873 + CA264_01730 0.40 -1.8 404,010 + CA264_01730 0.47 +1.0 404,031 + CA264_01730 0.48 -0.6 404,143 - CA264_01730 0.53 -1.0 404,143 - CA264_01730 0.53 -0.6 404,230 - CA264_01730 0.57 +0.2 404,243 - CA264_01730 0.57 +1.0 404,267 + CA264_01730 0.59 -1.1 404,369 - CA264_01730 0.63 -1.6 404,370 + CA264_01730 0.63 -1.8 404,371 - CA264_01730 0.63 -2.1 404,470 - CA264_01730 0.68 -1.8 404,483 + CA264_01730 0.69 -2.3 404,615 + CA264_01730 0.75 -1.8 404,615 + CA264_01730 0.75 -1.0 404,616 - CA264_01730 0.75 -0.6 404,630 + CA264_01730 0.75 +0.0 404,630 + CA264_01730 0.75 -2.6 404,643 + CA264_01730 0.76 -2.8 404,728 - CA264_01730 0.80 +1.0 404,732 + CA264_01730 0.80 +0.0 404,772 + CA264_01730 0.82 -0.6 404,796 - CA264_01730 0.83 -1.9 404,822 + CA264_01730 0.84 -2.2 404,970 - +0.0 405,137 + -0.8 405,139 + -2.3 405,141 + -0.6 405,141 + +0.2 405,142 - +0.0 405,142 - -1.5 405,142 - -0.4 405,160 + -0.0 405,214 - -0.2 405,216 + -1.5 405,217 - -0.1 405,217 - -1.0 405,228 + -1.3 405,228 + -1.1 405,245 + -0.5 405,246 - +0.8 405,246 - -1.0 405,264 + +0.1 405,264 + -0.0 405,264 + -0.1 405,289 - -0.4 405,329 + +0.2 405,329 + -0.6 405,508 - -1.8 405,572 - CA264_01735 0.12 -3.0 405,741 + CA264_01735 0.22 -0.4 405,741 + CA264_01735 0.22 +1.0 405,785 - CA264_01735 0.24 -0.5 405,845 - CA264_01735 0.28 -0.5 405,845 - CA264_01735 0.28 +2.0 405,885 - CA264_01735 0.30 -1.5 405,893 + CA264_01735 0.30 -1.3 405,900 - CA264_01735 0.31 -1.5
Or see this region's nucleotide sequence