Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00220 and CA264_00225 are separated by 2 nucleotides CA264_00225 and CA264_00230 are separated by 354 nucleotides CA264_00230 and CA264_00235 are separated by 170 nucleotides CA264_00235 and CA264_00240 overlap by 37 nucleotides
CA264_00220: CA264_00220 - pyrophosphatase, at 55,835 to 56,161
_00220
CA264_00225: CA264_00225 - D-tyrosyl-tRNA(Tyr) deacylase, at 56,164 to 56,622
_00225
CA264_00230: CA264_00230 - hypothetical protein, at 56,977 to 57,624
_00230
CA264_00235: CA264_00235 - hypothetical protein, at 57,795 to 58,112
_00235
CA264_00240: CA264_00240 - hypothetical protein, at 58,076 to 58,672
_00240
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.072 kb on + strand, within CA264_00220 at 56.073 kb on - strand, within CA264_00220 at 56.088 kb on - strand, within CA264_00220 at 56.128 kb on + strand, within CA264_00220 at 56.170 kb on + strand at 56.306 kb on + strand, within CA264_00225 at 56.306 kb on + strand, within CA264_00225 at 56.339 kb on + strand, within CA264_00225 at 56.339 kb on + strand, within CA264_00225 at 56.340 kb on - strand, within CA264_00225 at 56.340 kb on - strand, within CA264_00225 at 56.340 kb on - strand, within CA264_00225 at 56.344 kb on - strand, within CA264_00225 at 56.344 kb on - strand, within CA264_00225 at 56.346 kb on - strand, within CA264_00225 at 56.346 kb on - strand, within CA264_00225 at 56.427 kb on + strand, within CA264_00225 at 56.431 kb on + strand, within CA264_00225 at 56.432 kb on - strand, within CA264_00225 at 56.432 kb on - strand, within CA264_00225 at 56.432 kb on - strand, within CA264_00225 at 56.442 kb on + strand, within CA264_00225 at 56.567 kb on - strand, within CA264_00225 at 56.652 kb on - strand at 56.676 kb on - strand at 56.681 kb on + strand at 56.682 kb on - strand at 56.841 kb on + strand at 56.842 kb on - strand at 56.866 kb on + strand at 56.867 kb on - strand at 56.867 kb on - strand at 56.874 kb on + strand at 56.874 kb on + strand at 56.875 kb on - strand at 56.877 kb on - strand at 56.927 kb on + strand at 56.983 kb on + strand at 56.984 kb on - strand at 56.984 kb on - strand at 56.987 kb on + strand at 56.987 kb on + strand at 56.997 kb on - strand at 56.997 kb on - strand at 57.030 kb on - strand at 57.044 kb on - strand, within CA264_00230 at 57.045 kb on + strand, within CA264_00230 at 57.046 kb on - strand, within CA264_00230 at 57.046 kb on - strand, within CA264_00230 at 57.102 kb on + strand, within CA264_00230 at 57.275 kb on + strand, within CA264_00230 at 57.276 kb on - strand, within CA264_00230 at 57.276 kb on - strand, within CA264_00230 at 57.276 kb on - strand, within CA264_00230 at 57.290 kb on - strand, within CA264_00230 at 57.543 kb on + strand, within CA264_00230 at 57.544 kb on - strand, within CA264_00230 at 57.544 kb on - strand, within CA264_00230 at 57.579 kb on + strand at 57.586 kb on - strand at 57.586 kb on - strand at 57.587 kb on + strand at 57.588 kb on - strand at 57.636 kb on + strand at 57.636 kb on + strand at 57.637 kb on - strand at 57.637 kb on - strand at 57.658 kb on + strand at 57.659 kb on - strand at 57.668 kb on + strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.672 kb on + strand at 57.673 kb on - strand at 57.678 kb on + strand at 57.702 kb on - strand at 57.703 kb on + strand at 57.704 kb on - strand at 57.739 kb on + strand at 57.740 kb on - strand at 57.740 kb on - strand at 57.740 kb on - strand at 57.744 kb on + strand at 57.744 kb on + strand at 57.745 kb on - strand at 57.745 kb on - strand at 57.800 kb on + strand at 57.801 kb on - strand at 57.802 kb on + strand at 57.803 kb on - strand at 57.803 kb on - strand at 57.818 kb on + strand at 57.819 kb on - strand at 57.930 kb on - strand, within CA264_00235 at 57.986 kb on + strand, within CA264_00235 at 57.987 kb on - strand, within CA264_00235 at 57.987 kb on - strand, within CA264_00235 at 58.029 kb on + strand, within CA264_00235 at 58.029 kb on + strand, within CA264_00235 at 58.030 kb on - strand, within CA264_00235 at 58.030 kb on - strand, within CA264_00235 at 58.064 kb on - strand, within CA264_00235 at 58.099 kb on - strand at 58.264 kb on + strand, within CA264_00240 at 58.321 kb on - strand, within CA264_00240 at 58.365 kb on - strand, within CA264_00240 at 58.485 kb on + strand, within CA264_00240 at 58.493 kb on + strand, within CA264_00240 at 58.522 kb on - strand, within CA264_00240 at 58.588 kb on + strand, within CA264_00240
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 56,072 + CA264_00220 0.72 +0.8 56,073 - CA264_00220 0.73 +0.1 56,088 - CA264_00220 0.77 -0.4 56,128 + CA264_00220 0.90 -0.0 56,170 + +0.3 56,306 + CA264_00225 0.31 +0.0 56,306 + CA264_00225 0.31 +0.5 56,339 + CA264_00225 0.38 -2.1 56,339 + CA264_00225 0.38 +0.4 56,340 - CA264_00225 0.38 +0.1 56,340 - CA264_00225 0.38 +0.1 56,340 - CA264_00225 0.38 -0.7 56,344 - CA264_00225 0.39 +0.8 56,344 - CA264_00225 0.39 -0.4 56,346 - CA264_00225 0.40 -0.4 56,346 - CA264_00225 0.40 -1.2 56,427 + CA264_00225 0.57 +1.1 56,431 + CA264_00225 0.58 -1.1 56,432 - CA264_00225 0.58 -0.1 56,432 - CA264_00225 0.58 -0.9 56,432 - CA264_00225 0.58 -1.0 56,442 + CA264_00225 0.61 -0.0 56,567 - CA264_00225 0.88 -0.3 56,652 - +0.2 56,676 - +0.1 56,681 + -0.1 56,682 - +0.6 56,841 + -0.9 56,842 - +0.7 56,866 + -0.2 56,867 - -0.4 56,867 - -0.7 56,874 + +0.2 56,874 + +0.5 56,875 - -2.1 56,877 - -1.5 56,927 + -0.1 56,983 + -0.2 56,984 - +0.2 56,984 - +0.1 56,987 + -0.8 56,987 + -0.9 56,997 - -0.0 56,997 - -1.5 57,030 - +0.3 57,044 - CA264_00230 0.10 -0.0 57,045 + CA264_00230 0.10 -1.2 57,046 - CA264_00230 0.11 -0.5 57,046 - CA264_00230 0.11 -0.3 57,102 + CA264_00230 0.19 -0.1 57,275 + CA264_00230 0.46 -1.5 57,276 - CA264_00230 0.46 -0.7 57,276 - CA264_00230 0.46 -0.5 57,276 - CA264_00230 0.46 -0.5 57,290 - CA264_00230 0.48 -0.1 57,543 + CA264_00230 0.87 +0.1 57,544 - CA264_00230 0.88 -0.6 57,544 - CA264_00230 0.88 +0.8 57,579 + -0.7 57,586 - -0.0 57,586 - -0.3 57,587 + +0.0 57,588 - -0.0 57,636 + +0.0 57,636 + -0.5 57,637 - -0.2 57,637 - +0.8 57,658 + -0.9 57,659 - -0.5 57,668 + +0.9 57,669 - -0.0 57,669 - -1.7 57,669 - -0.8 57,669 - -1.0 57,669 - -0.1 57,672 + +1.1 57,673 - -0.3 57,678 + -0.1 57,702 - -0.4 57,703 + -0.4 57,704 - -0.2 57,739 + -0.7 57,740 - +1.2 57,740 - -2.1 57,740 - -0.7 57,744 + -0.5 57,744 + -0.4 57,745 - -1.3 57,745 - -0.5 57,800 + +1.1 57,801 - +1.8 57,802 + +0.3 57,803 - -2.5 57,803 - +0.6 57,818 + +0.3 57,819 - -0.1 57,930 - CA264_00235 0.42 +0.4 57,986 + CA264_00235 0.60 -0.4 57,987 - CA264_00235 0.60 +0.9 57,987 - CA264_00235 0.60 -0.2 58,029 + CA264_00235 0.74 -0.7 58,029 + CA264_00235 0.74 +0.7 58,030 - CA264_00235 0.74 +0.8 58,030 - CA264_00235 0.74 +0.5 58,064 - CA264_00235 0.85 +0.7 58,099 - -0.6 58,264 + CA264_00240 0.31 +1.1 58,321 - CA264_00240 0.41 -0.4 58,365 - CA264_00240 0.48 +0.5 58,485 + CA264_00240 0.69 -0.5 58,493 + CA264_00240 0.70 -0.3 58,522 - CA264_00240 0.75 -0.1 58,588 + CA264_00240 0.86 -0.5
Or see this region's nucleotide sequence