Strain Fitness in Agrobacterium fabrum C58 around Atu5506

Experiment: R2A with Tetracycline 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5504 and Atu5505 are separated by 3 nucleotidesAtu5505 and Atu5506 overlap by 4 nucleotidesAtu5506 and Atu5507 are separated by 246 nucleotides Atu5504: Atu5504 - hypothetical protein, at 495,697 to 496,290 Atu5504 Atu5505: Atu5505 - two component response regulator, at 496,294 to 496,959 Atu5505 Atu5506: Atu5506 - two component sensor kinase, at 496,956 to 498,314 Atu5506 Atu5507: Atu5507 - gamma-glutamyltranspeptidase, at 498,561 to 500,318 Atu5507 Position (kb) 496 497 498 499Strain fitness (log2 ratio) -2 -1 0 1 2 3at 496.081 kb on + strand, within Atu5504at 496.081 kb on + strand, within Atu5504at 496.110 kb on - strand, within Atu5504at 496.184 kb on - strand, within Atu5504at 496.292 kb on - strandat 496.323 kb on + strandat 496.324 kb on + strandat 496.333 kb on - strandat 496.338 kb on - strandat 496.370 kb on + strand, within Atu5505at 496.453 kb on - strand, within Atu5505at 496.468 kb on + strand, within Atu5505at 496.543 kb on - strand, within Atu5505at 496.544 kb on + strand, within Atu5505at 496.599 kb on + strand, within Atu5505at 496.607 kb on - strand, within Atu5505at 496.638 kb on + strand, within Atu5505at 496.638 kb on + strand, within Atu5505at 496.681 kb on + strand, within Atu5505at 496.689 kb on - strand, within Atu5505at 496.734 kb on - strand, within Atu5505at 496.784 kb on + strand, within Atu5505at 496.792 kb on - strand, within Atu5505at 496.796 kb on - strand, within Atu5505at 496.851 kb on + strand, within Atu5505at 496.859 kb on - strand, within Atu5505at 496.874 kb on - strand, within Atu5505at 496.906 kb on - strandat 496.924 kb on - strandat 496.932 kb on - strandat 496.934 kb on - strandat 496.944 kb on - strandat 497.080 kb on + strandat 497.088 kb on - strandat 497.117 kb on - strand, within Atu5506at 497.151 kb on + strand, within Atu5506at 497.222 kb on + strand, within Atu5506at 497.223 kb on - strand, within Atu5506at 497.279 kb on - strand, within Atu5506at 497.306 kb on + strand, within Atu5506at 497.316 kb on + strand, within Atu5506at 497.316 kb on + strand, within Atu5506at 497.316 kb on + strand, within Atu5506at 497.316 kb on + strand, within Atu5506at 497.359 kb on - strand, within Atu5506at 497.361 kb on - strand, within Atu5506at 497.409 kb on + strand, within Atu5506at 497.409 kb on + strand, within Atu5506at 497.417 kb on - strand, within Atu5506at 497.417 kb on - strand, within Atu5506at 497.417 kb on - strand, within Atu5506at 497.417 kb on - strand, within Atu5506at 497.417 kb on - strand, within Atu5506at 497.417 kb on - strand, within Atu5506at 497.540 kb on - strand, within Atu5506at 497.578 kb on - strand, within Atu5506at 497.622 kb on - strand, within Atu5506at 497.684 kb on + strand, within Atu5506at 497.700 kb on - strand, within Atu5506at 497.781 kb on - strand, within Atu5506at 497.860 kb on + strand, within Atu5506at 497.865 kb on + strand, within Atu5506at 497.996 kb on - strand, within Atu5506at 498.007 kb on + strand, within Atu5506at 498.081 kb on + strand, within Atu5506at 498.094 kb on - strand, within Atu5506at 498.107 kb on + strand, within Atu5506at 498.150 kb on - strand, within Atu5506at 498.157 kb on - strand, within Atu5506at 498.184 kb on + strandat 498.288 kb on - strandat 498.288 kb on - strandat 498.424 kb on + strandat 498.432 kb on - strandat 498.432 kb on - strandat 498.447 kb on + strandat 498.558 kb on - strandat 498.633 kb on + strandat 498.772 kb on + strand, within Atu5507at 498.792 kb on + strand, within Atu5507at 498.826 kb on + strand, within Atu5507at 498.826 kb on + strand, within Atu5507at 498.855 kb on + strand, within Atu5507at 498.863 kb on - strand, within Atu5507at 498.925 kb on + strand, within Atu5507at 498.994 kb on - strand, within Atu5507at 499.004 kb on + strand, within Atu5507at 499.041 kb on + strand, within Atu5507at 499.068 kb on - strand, within Atu5507at 499.110 kb on - strand, within Atu5507at 499.127 kb on - strand, within Atu5507at 499.206 kb on + strand, within Atu5507at 499.214 kb on - strand, within Atu5507at 499.217 kb on - strand, within Atu5507

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.002 mM
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496,081 + Atu5504 0.65 -0.3
496,081 + Atu5504 0.65 +0.7
496,110 - Atu5504 0.70 +0.6
496,184 - Atu5504 0.82 -0.2
496,292 - +0.1
496,323 + +0.2
496,324 + +0.7
496,333 - -0.7
496,338 - -0.3
496,370 + Atu5505 0.11 -0.4
496,453 - Atu5505 0.24 +0.8
496,468 + Atu5505 0.26 +0.5
496,543 - Atu5505 0.37 +1.0
496,544 + Atu5505 0.38 -0.3
496,599 + Atu5505 0.46 +0.2
496,607 - Atu5505 0.47 -0.5
496,638 + Atu5505 0.52 -1.1
496,638 + Atu5505 0.52 -1.5
496,681 + Atu5505 0.58 +0.6
496,689 - Atu5505 0.59 -0.2
496,734 - Atu5505 0.66 +0.2
496,784 + Atu5505 0.74 +1.6
496,792 - Atu5505 0.75 +1.1
496,796 - Atu5505 0.75 +2.3
496,851 + Atu5505 0.84 -0.3
496,859 - Atu5505 0.85 +3.5
496,874 - Atu5505 0.87 -0.3
496,906 - +0.9
496,924 - -0.2
496,932 - +2.5
496,934 - +1.5
496,944 - -0.4
497,080 + +1.0
497,088 - +1.5
497,117 - Atu5506 0.12 -0.2
497,151 + Atu5506 0.14 -0.8
497,222 + Atu5506 0.20 +0.5
497,223 - Atu5506 0.20 -0.2
497,279 - Atu5506 0.24 -1.1
497,306 + Atu5506 0.26 +0.5
497,316 + Atu5506 0.26 +1.9
497,316 + Atu5506 0.26 +0.6
497,316 + Atu5506 0.26 -0.1
497,316 + Atu5506 0.26 -0.4
497,359 - Atu5506 0.30 -0.4
497,361 - Atu5506 0.30 +0.2
497,409 + Atu5506 0.33 +2.5
497,409 + Atu5506 0.33 -0.5
497,417 - Atu5506 0.34 -1.0
497,417 - Atu5506 0.34 +0.1
497,417 - Atu5506 0.34 +0.1
497,417 - Atu5506 0.34 +1.8
497,417 - Atu5506 0.34 +2.3
497,417 - Atu5506 0.34 -0.7
497,540 - Atu5506 0.43 +0.1
497,578 - Atu5506 0.46 +1.1
497,622 - Atu5506 0.49 -1.5
497,684 + Atu5506 0.54 +0.4
497,700 - Atu5506 0.55 -0.5
497,781 - Atu5506 0.61 -1.4
497,860 + Atu5506 0.67 +0.6
497,865 + Atu5506 0.67 -1.4
497,996 - Atu5506 0.77 -2.1
498,007 + Atu5506 0.77 -1.2
498,081 + Atu5506 0.83 -1.8
498,094 - Atu5506 0.84 +1.4
498,107 + Atu5506 0.85 -0.2
498,150 - Atu5506 0.88 -1.4
498,157 - Atu5506 0.88 -1.1
498,184 + +0.7
498,288 - -0.8
498,288 - -1.1
498,424 + -1.3
498,432 - +0.1
498,432 - +0.6
498,447 + +1.8
498,558 - +0.6
498,633 + +1.3
498,772 + Atu5507 0.12 -1.2
498,792 + Atu5507 0.13 -0.9
498,826 + Atu5507 0.15 +0.1
498,826 + Atu5507 0.15 +1.1
498,855 + Atu5507 0.17 +0.3
498,863 - Atu5507 0.17 +2.5
498,925 + Atu5507 0.21 +1.0
498,994 - Atu5507 0.25 +2.9
499,004 + Atu5507 0.25 +1.8
499,041 + Atu5507 0.27 +0.8
499,068 - Atu5507 0.29 +2.1
499,110 - Atu5507 0.31 -0.3
499,127 - Atu5507 0.32 -1.3
499,206 + Atu5507 0.37 +1.3
499,214 - Atu5507 0.37 -0.4
499,217 - Atu5507 0.37 +1.0

Or see this region's nucleotide sequence