Experiment: R2A with Tetracycline 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu4872 and Atu4873 are separated by 126 nucleotides Atu4873 and Atu4874 are separated by 55 nucleotides Atu4874 and Atu4875 are separated by 405 nucleotides
Atu4872: Atu4872 - LysR family transcriptional regulator, at 2,054,871 to 2,055,770
Atu4872
Atu4873: Atu4873 - TetR family transcriptional regulator, at 2,055,897 to 2,056,469
Atu4873
Atu4874: Atu4874 - hypothetical protein, at 2,056,525 to 2,056,959
Atu4874
Atu4875: Atu4875 - hypothetical protein, at 2,057,365 to 2,057,766
Atu4875
Position (kb)
2055
2056
2057 Strain fitness (log2 ratio)
-2
-1
0
1 at 2054.902 kb on + strand at 2054.944 kb on + strand at 2054.956 kb on + strand at 2054.964 kb on - strand, within Atu4872 at 2054.970 kb on + strand, within Atu4872 at 2054.978 kb on - strand, within Atu4872 at 2054.978 kb on - strand, within Atu4872 at 2055.068 kb on - strand, within Atu4872 at 2055.068 kb on - strand, within Atu4872 at 2055.085 kb on + strand, within Atu4872 at 2055.093 kb on - strand, within Atu4872 at 2055.093 kb on - strand, within Atu4872 at 2055.093 kb on - strand, within Atu4872 at 2055.093 kb on - strand, within Atu4872 at 2055.207 kb on + strand, within Atu4872 at 2055.214 kb on + strand, within Atu4872 at 2055.229 kb on + strand, within Atu4872 at 2055.329 kb on + strand, within Atu4872 at 2055.434 kb on - strand, within Atu4872 at 2055.469 kb on + strand, within Atu4872 at 2055.482 kb on - strand, within Atu4872 at 2055.502 kb on - strand, within Atu4872 at 2055.578 kb on - strand, within Atu4872 at 2055.692 kb on + strand at 2055.825 kb on + strand at 2055.953 kb on + strand at 2056.012 kb on + strand, within Atu4873 at 2056.020 kb on - strand, within Atu4873 at 2056.043 kb on - strand, within Atu4873 at 2056.171 kb on + strand, within Atu4873 at 2056.189 kb on - strand, within Atu4873 at 2056.194 kb on - strand, within Atu4873 at 2056.199 kb on - strand, within Atu4873 at 2056.305 kb on + strand, within Atu4873 at 2056.313 kb on - strand, within Atu4873 at 2056.313 kb on - strand, within Atu4873 at 2056.418 kb on - strand at 2056.431 kb on + strand at 2056.432 kb on + strand at 2056.432 kb on + strand at 2056.585 kb on + strand, within Atu4874 at 2056.593 kb on - strand, within Atu4874 at 2056.593 kb on - strand, within Atu4874 at 2056.601 kb on - strand, within Atu4874 at 2056.617 kb on + strand, within Atu4874 at 2056.652 kb on + strand, within Atu4874 at 2056.669 kb on - strand, within Atu4874 at 2056.697 kb on + strand, within Atu4874 at 2056.698 kb on + strand, within Atu4874 at 2056.698 kb on + strand, within Atu4874 at 2056.706 kb on - strand, within Atu4874 at 2056.712 kb on - strand, within Atu4874 at 2056.718 kb on + strand, within Atu4874 at 2056.764 kb on - strand, within Atu4874 at 2056.855 kb on - strand, within Atu4874 at 2056.857 kb on + strand, within Atu4874 at 2056.933 kb on - strand at 2056.946 kb on + strand at 2056.954 kb on - strand at 2057.022 kb on + strand at 2057.027 kb on + strand at 2057.028 kb on - strand at 2057.028 kb on - strand at 2057.028 kb on - strand at 2057.035 kb on - strand at 2057.081 kb on - strand at 2057.097 kb on + strand at 2057.191 kb on + strand at 2057.191 kb on + strand at 2057.205 kb on + strand at 2057.205 kb on + strand at 2057.206 kb on + strand at 2057.213 kb on - strand at 2057.223 kb on + strand at 2057.237 kb on - strand at 2057.377 kb on - strand at 2057.419 kb on - strand, within Atu4875 at 2057.419 kb on - strand, within Atu4875 at 2057.419 kb on - strand, within Atu4875 at 2057.445 kb on - strand, within Atu4875 at 2057.457 kb on + strand, within Atu4875
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.002 mM remove 2,054,902 + -0.9 2,054,944 + +0.2 2,054,956 + -0.3 2,054,964 - Atu4872 0.10 -1.0 2,054,970 + Atu4872 0.11 -0.6 2,054,978 - Atu4872 0.12 +0.1 2,054,978 - Atu4872 0.12 +0.7 2,055,068 - Atu4872 0.22 -0.2 2,055,068 - Atu4872 0.22 -0.7 2,055,085 + Atu4872 0.24 -0.4 2,055,093 - Atu4872 0.25 +0.0 2,055,093 - Atu4872 0.25 +0.3 2,055,093 - Atu4872 0.25 -0.6 2,055,093 - Atu4872 0.25 -1.4 2,055,207 + Atu4872 0.37 +0.1 2,055,214 + Atu4872 0.38 -1.2 2,055,229 + Atu4872 0.40 -0.7 2,055,329 + Atu4872 0.51 -2.0 2,055,434 - Atu4872 0.63 -2.5 2,055,469 + Atu4872 0.66 -1.4 2,055,482 - Atu4872 0.68 -0.6 2,055,502 - Atu4872 0.70 -0.8 2,055,578 - Atu4872 0.79 +1.3 2,055,692 + -1.2 2,055,825 + -1.0 2,055,953 + -1.4 2,056,012 + Atu4873 0.20 -1.9 2,056,020 - Atu4873 0.21 -1.7 2,056,043 - Atu4873 0.25 -1.9 2,056,171 + Atu4873 0.48 -1.2 2,056,189 - Atu4873 0.51 -1.2 2,056,194 - Atu4873 0.52 -0.5 2,056,199 - Atu4873 0.53 +0.5 2,056,305 + Atu4873 0.71 -1.7 2,056,313 - Atu4873 0.73 -0.0 2,056,313 - Atu4873 0.73 -0.9 2,056,418 - +0.3 2,056,431 + -1.1 2,056,432 + -0.5 2,056,432 + -1.1 2,056,585 + Atu4874 0.14 -1.4 2,056,593 - Atu4874 0.16 -2.7 2,056,593 - Atu4874 0.16 -0.8 2,056,601 - Atu4874 0.17 -0.5 2,056,617 + Atu4874 0.21 -0.8 2,056,652 + Atu4874 0.29 -0.8 2,056,669 - Atu4874 0.33 -0.7 2,056,697 + Atu4874 0.40 -0.4 2,056,698 + Atu4874 0.40 -1.2 2,056,698 + Atu4874 0.40 -0.9 2,056,706 - Atu4874 0.42 -1.0 2,056,712 - Atu4874 0.43 +0.3 2,056,718 + Atu4874 0.44 -0.6 2,056,764 - Atu4874 0.55 -1.4 2,056,855 - Atu4874 0.76 -0.7 2,056,857 + Atu4874 0.76 -0.6 2,056,933 - -0.1 2,056,946 + -0.7 2,056,954 - -0.9 2,057,022 + -0.4 2,057,027 + -1.3 2,057,028 - +0.3 2,057,028 - -0.4 2,057,028 - -0.1 2,057,035 - -0.8 2,057,081 - -0.3 2,057,097 + +0.8 2,057,191 + -0.7 2,057,191 + -1.0 2,057,205 + +0.5 2,057,205 + -0.3 2,057,206 + -0.2 2,057,213 - -1.6 2,057,223 + -0.4 2,057,237 - -2.1 2,057,377 - -1.2 2,057,419 - Atu4875 0.13 -0.8 2,057,419 - Atu4875 0.13 -0.5 2,057,419 - Atu4875 0.13 +1.1 2,057,445 - Atu4875 0.20 -0.3 2,057,457 + Atu4875 0.23 +0.2
Or see this region's nucleotide sequence