Strain Fitness in Agrobacterium fabrum C58 around Atu3799

Experiment: R2A with Tetracycline 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3797 and Atu3798 are separated by 305 nucleotidesAtu3798 and Atu3799 are separated by 35 nucleotidesAtu3799 and Atu3800 are separated by 283 nucleotides Atu3797: Atu3797 - HlyD family secretion protein, at 892,422 to 893,498 Atu3797 Atu3798: Atu3798 - TetR family transcriptional regulator, at 893,804 to 894,418 Atu3798 Atu3799: Atu3799 - GntR family transcriptional regulator, at 894,454 to 895,437 Atu3799 Atu3800: Atu3800 - proline/glycine betaine ABC transporter substrate-binding protein, at 895,721 to 896,758 Atu3800 Position (kb) 894 895 896Strain fitness (log2 ratio) -2 -1 0 1 2at 893.505 kb on + strandat 893.634 kb on + strandat 893.721 kb on + strandat 893.723 kb on + strandat 893.723 kb on + strandat 893.729 kb on - strandat 893.749 kb on - strandat 893.766 kb on + strandat 893.870 kb on + strand, within Atu3798at 893.945 kb on - strand, within Atu3798at 893.948 kb on + strand, within Atu3798at 893.986 kb on + strand, within Atu3798at 894.051 kb on + strand, within Atu3798at 894.294 kb on - strand, within Atu3798at 894.323 kb on - strand, within Atu3798at 894.384 kb on + strandat 894.384 kb on + strandat 894.392 kb on - strandat 894.402 kb on - strandat 894.415 kb on - strandat 894.415 kb on - strandat 894.415 kb on - strandat 894.415 kb on - strandat 894.415 kb on - strandat 894.485 kb on + strandat 894.487 kb on + strandat 894.591 kb on + strand, within Atu3799at 894.596 kb on + strand, within Atu3799at 894.601 kb on + strand, within Atu3799at 894.690 kb on + strand, within Atu3799at 894.854 kb on - strand, within Atu3799at 894.878 kb on - strand, within Atu3799at 894.893 kb on - strand, within Atu3799at 894.916 kb on + strand, within Atu3799at 894.916 kb on + strand, within Atu3799at 894.924 kb on - strand, within Atu3799at 894.924 kb on - strand, within Atu3799at 894.924 kb on - strand, within Atu3799at 894.971 kb on - strand, within Atu3799at 895.040 kb on - strand, within Atu3799at 895.064 kb on + strand, within Atu3799at 895.084 kb on + strand, within Atu3799at 895.087 kb on - strand, within Atu3799at 895.199 kb on - strand, within Atu3799at 895.199 kb on - strand, within Atu3799at 895.394 kb on - strandat 895.397 kb on + strandat 895.405 kb on - strandat 895.439 kb on + strandat 895.447 kb on - strandat 895.464 kb on - strandat 895.484 kb on + strandat 895.602 kb on + strandat 895.750 kb on + strandat 895.750 kb on + strandat 895.758 kb on - strandat 895.758 kb on - strandat 895.882 kb on + strand, within Atu3800at 895.899 kb on - strand, within Atu3800at 895.899 kb on - strand, within Atu3800at 895.927 kb on + strand, within Atu3800at 895.941 kb on + strand, within Atu3800at 895.941 kb on + strand, within Atu3800at 896.033 kb on + strand, within Atu3800at 896.046 kb on - strand, within Atu3800at 896.080 kb on - strand, within Atu3800at 896.082 kb on + strand, within Atu3800at 896.101 kb on + strand, within Atu3800at 896.101 kb on + strand, within Atu3800at 896.144 kb on + strand, within Atu3800at 896.144 kb on + strand, within Atu3800at 896.199 kb on - strand, within Atu3800at 896.199 kb on - strand, within Atu3800at 896.251 kb on - strand, within Atu3800at 896.258 kb on - strand, within Atu3800at 896.275 kb on + strand, within Atu3800at 896.275 kb on + strand, within Atu3800at 896.362 kb on + strand, within Atu3800at 896.362 kb on + strand, within Atu3800at 896.370 kb on - strand, within Atu3800

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.002 mM
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893,505 + +0.8
893,634 + -0.4
893,721 + -0.9
893,723 + -0.1
893,723 + -0.5
893,729 - -0.9
893,749 - +1.7
893,766 + -0.4
893,870 + Atu3798 0.11 -1.6
893,945 - Atu3798 0.23 -2.2
893,948 + Atu3798 0.23 +1.0
893,986 + Atu3798 0.30 -1.4
894,051 + Atu3798 0.40 -0.1
894,294 - Atu3798 0.80 -1.9
894,323 - Atu3798 0.84 -0.7
894,384 + -1.2
894,384 + -1.4
894,392 - -0.2
894,402 - +0.3
894,415 - -1.0
894,415 - -1.6
894,415 - -0.1
894,415 - -1.3
894,415 - -1.8
894,485 + +1.4
894,487 + -1.9
894,591 + Atu3799 0.14 -1.3
894,596 + Atu3799 0.14 -1.6
894,601 + Atu3799 0.15 -0.8
894,690 + Atu3799 0.24 -1.8
894,854 - Atu3799 0.41 -0.1
894,878 - Atu3799 0.43 +0.7
894,893 - Atu3799 0.45 -0.1
894,916 + Atu3799 0.47 -1.1
894,916 + Atu3799 0.47 +1.3
894,924 - Atu3799 0.48 -1.1
894,924 - Atu3799 0.48 +0.1
894,924 - Atu3799 0.48 -0.3
894,971 - Atu3799 0.53 +2.3
895,040 - Atu3799 0.60 -0.7
895,064 + Atu3799 0.62 -0.0
895,084 + Atu3799 0.64 +0.8
895,087 - Atu3799 0.64 -2.1
895,199 - Atu3799 0.76 -0.6
895,199 - Atu3799 0.76 +0.1
895,394 - -0.5
895,397 + -0.3
895,405 - +0.7
895,439 + +0.4
895,447 - -0.5
895,464 - -0.1
895,484 + -0.7
895,602 + +0.8
895,750 + +1.0
895,750 + +0.2
895,758 - +0.3
895,758 - +0.2
895,882 + Atu3800 0.16 -0.5
895,899 - Atu3800 0.17 -0.6
895,899 - Atu3800 0.17 -0.2
895,927 + Atu3800 0.20 -1.1
895,941 + Atu3800 0.21 -0.8
895,941 + Atu3800 0.21 +0.2
896,033 + Atu3800 0.30 +0.5
896,046 - Atu3800 0.31 +0.2
896,080 - Atu3800 0.35 +0.1
896,082 + Atu3800 0.35 -0.3
896,101 + Atu3800 0.37 +0.2
896,101 + Atu3800 0.37 -0.2
896,144 + Atu3800 0.41 +0.1
896,144 + Atu3800 0.41 -0.4
896,199 - Atu3800 0.46 +0.2
896,199 - Atu3800 0.46 -0.2
896,251 - Atu3800 0.51 +0.0
896,258 - Atu3800 0.52 +0.0
896,275 + Atu3800 0.53 -0.3
896,275 + Atu3800 0.53 -0.6
896,362 + Atu3800 0.62 +0.1
896,362 + Atu3800 0.62 -0.6
896,370 - Atu3800 0.63 +0.1

Or see this region's nucleotide sequence