Strain Fitness in Agrobacterium fabrum C58 around Atu3705

Experiment: R2A with Tetracycline 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3704 and Atu3705 are separated by 438 nucleotidesAtu3705 and Atu3706 are separated by 657 nucleotides Atu3704: Atu3704 - hypothetical protein, at 782,420 to 783,610 Atu3704 Atu3705: Atu3705 - hypothetical protein, at 784,049 to 784,696 Atu3705 Atu3706: Atu3706 - D-3-phosphoglycerate dehydrogenase, at 785,354 to 786,949 Atu3706 Position (kb) 784 785Strain fitness (log2 ratio) -2 -1 0 1 2at 783.055 kb on + strand, within Atu3704at 783.126 kb on + strand, within Atu3704at 783.377 kb on + strand, within Atu3704at 783.556 kb on + strandat 783.717 kb on - strandat 783.737 kb on - strandat 783.868 kb on + strandat 783.868 kb on + strandat 784.012 kb on - strandat 784.205 kb on - strand, within Atu3705at 784.333 kb on + strand, within Atu3705at 784.379 kb on - strand, within Atu3705at 784.484 kb on - strand, within Atu3705at 784.529 kb on + strand, within Atu3705at 784.980 kb on + strandat 784.989 kb on + strandat 785.152 kb on + strandat 785.152 kb on + strandat 785.154 kb on + strandat 785.160 kb on - strandat 785.322 kb on + strandat 785.540 kb on - strand, within Atu3706

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.002 mM
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783,055 + Atu3704 0.53 +1.2
783,126 + Atu3704 0.59 +1.2
783,377 + Atu3704 0.80 -0.6
783,556 + +0.3
783,717 - -0.8
783,737 - -1.6
783,868 + +0.9
783,868 + -2.4
784,012 - -0.1
784,205 - Atu3705 0.24 +0.5
784,333 + Atu3705 0.44 -0.4
784,379 - Atu3705 0.51 -0.1
784,484 - Atu3705 0.67 -0.1
784,529 + Atu3705 0.74 -0.8
784,980 + +0.3
784,989 + +1.4
785,152 + -0.4
785,152 + -0.4
785,154 + +1.9
785,160 - -0.0
785,322 + -0.4
785,540 - Atu3706 0.12 -0.2

Or see this region's nucleotide sequence