Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20930 and CA264_20935 are separated by 9 nucleotides CA264_20935 and CA264_20940 are separated by 82 nucleotides CA264_20940 and CA264_20945 are separated by 330 nucleotides CA264_20945 and CA264_20950 are separated by 82 nucleotides
CA264_20930: CA264_20930 - hypothetical protein, at 50,791 to 51,402
_20930
CA264_20935: CA264_20935 - transcriptional regulator, at 51,412 to 51,783
_20935
CA264_20940: CA264_20940 - pyridine nucleotide-disulfide oxidoreductase, at 51,866 to 53,200
_20940
CA264_20945: CA264_20945 - hypothetical protein, at 53,531 to 53,812
_20945
CA264_20950: CA264_20950 - hypothetical protein, at 53,895 to 54,149
_20950
Position (kb) 51
52
53
54 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 50.880 kb on - strand, within CA264_20930 at 50.904 kb on + strand, within CA264_20930 at 50.906 kb on + strand, within CA264_20930 at 51.151 kb on - strand, within CA264_20930 at 51.255 kb on - strand, within CA264_20930 at 51.429 kb on + strand at 51.439 kb on - strand at 51.488 kb on + strand, within CA264_20935 at 51.633 kb on - strand, within CA264_20935 at 51.763 kb on - strand at 51.791 kb on - strand at 51.795 kb on - strand at 51.795 kb on - strand at 51.847 kb on - strand at 51.952 kb on + strand at 52.184 kb on + strand, within CA264_20940 at 52.185 kb on - strand, within CA264_20940 at 52.258 kb on - strand, within CA264_20940 at 52.310 kb on + strand, within CA264_20940 at 52.311 kb on - strand, within CA264_20940 at 52.311 kb on - strand, within CA264_20940 at 52.311 kb on - strand, within CA264_20940 at 52.311 kb on - strand, within CA264_20940 at 52.311 kb on - strand, within CA264_20940 at 52.364 kb on - strand, within CA264_20940 at 52.383 kb on - strand, within CA264_20940 at 52.385 kb on - strand, within CA264_20940 at 52.441 kb on - strand, within CA264_20940 at 52.528 kb on - strand, within CA264_20940 at 52.528 kb on - strand, within CA264_20940 at 52.531 kb on - strand, within CA264_20940 at 52.531 kb on - strand, within CA264_20940 at 52.621 kb on - strand, within CA264_20940 at 52.681 kb on - strand, within CA264_20940 at 52.860 kb on - strand, within CA264_20940 at 52.900 kb on - strand, within CA264_20940 at 53.013 kb on - strand, within CA264_20940 at 53.114 kb on - strand at 53.185 kb on - strand at 53.190 kb on - strand at 53.190 kb on - strand at 53.199 kb on - strand at 53.233 kb on - strand at 53.247 kb on - strand at 53.251 kb on - strand at 53.281 kb on - strand at 53.281 kb on - strand at 53.326 kb on - strand at 53.369 kb on - strand at 53.400 kb on - strand at 53.546 kb on - strand at 53.546 kb on - strand at 53.566 kb on - strand, within CA264_20945 at 53.633 kb on - strand, within CA264_20945 at 53.633 kb on - strand, within CA264_20945 at 53.710 kb on - strand, within CA264_20945 at 53.845 kb on - strand at 53.845 kb on - strand at 53.868 kb on - strand at 53.903 kb on - strand at 53.903 kb on - strand at 53.916 kb on - strand at 53.995 kb on - strand, within CA264_20950 at 54.013 kb on - strand, within CA264_20950 at 54.054 kb on - strand, within CA264_20950 at 54.057 kb on - strand, within CA264_20950
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 50,880 - CA264_20930 0.15 -0.4 50,904 + CA264_20930 0.18 +1.4 50,906 + CA264_20930 0.19 +3.7 51,151 - CA264_20930 0.59 +1.8 51,255 - CA264_20930 0.76 -0.6 51,429 + +1.4 51,439 - +1.0 51,488 + CA264_20935 0.20 -0.8 51,633 - CA264_20935 0.59 -0.5 51,763 - +0.9 51,791 - +0.9 51,795 - -1.3 51,795 - -1.1 51,847 - +0.4 51,952 + +2.7 52,184 + CA264_20940 0.24 +3.4 52,185 - CA264_20940 0.24 -0.6 52,258 - CA264_20940 0.29 +0.7 52,310 + CA264_20940 0.33 +1.9 52,311 - CA264_20940 0.33 +0.5 52,311 - CA264_20940 0.33 -0.6 52,311 - CA264_20940 0.33 +0.9 52,311 - CA264_20940 0.33 -0.3 52,311 - CA264_20940 0.33 +0.8 52,364 - CA264_20940 0.37 +0.4 52,383 - CA264_20940 0.39 +0.4 52,385 - CA264_20940 0.39 +0.9 52,441 - CA264_20940 0.43 +1.1 52,528 - CA264_20940 0.50 -0.1 52,528 - CA264_20940 0.50 +0.1 52,531 - CA264_20940 0.50 +0.1 52,531 - CA264_20940 0.50 +0.5 52,621 - CA264_20940 0.57 -0.0 52,681 - CA264_20940 0.61 -0.1 52,860 - CA264_20940 0.74 -0.6 52,900 - CA264_20940 0.77 +0.4 53,013 - CA264_20940 0.86 -0.5 53,114 - -1.6 53,185 - +0.2 53,190 - -0.6 53,190 - -0.2 53,199 - -2.1 53,233 - -0.9 53,247 - +0.4 53,251 - +0.5 53,281 - +0.4 53,281 - -0.1 53,326 - +0.4 53,369 - +0.2 53,400 - -0.5 53,546 - +1.0 53,546 - -0.1 53,566 - CA264_20945 0.12 +0.4 53,633 - CA264_20945 0.36 +0.7 53,633 - CA264_20945 0.36 +1.3 53,710 - CA264_20945 0.63 +3.2 53,845 - +1.5 53,845 - +0.4 53,868 - +0.5 53,903 - +0.2 53,903 - +0.4 53,916 - +1.2 53,995 - CA264_20950 0.39 -0.2 54,013 - CA264_20950 0.46 -0.6 54,054 - CA264_20950 0.62 +0.4 54,057 - CA264_20950 0.64 -0.2
Or see this region's nucleotide sequence