Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20780 and CA264_20785 are separated by 243 nucleotides CA264_20785 and CA264_20790 are separated by 46 nucleotides CA264_20790 and CA264_20795 are separated by 260 nucleotides CA264_20795 and CA264_20800 are separated by 12 nucleotides CA264_20800 and CA264_20805 overlap by 14 nucleotides
CA264_20780: CA264_20780 - alpha-glucan family phosphorylase, at 16,983 to 18,638
_20780
CA264_20785: CA264_20785 - hypothetical protein, at 18,882 to 19,229
_20785
CA264_20790: CA264_20790 - glyceraldehyde-3-phosphate dehydrogenase, at 19,276 to 20,313
_20790
CA264_20795: CA264_20795 - hypothetical protein, at 20,574 to 20,816
_20795
CA264_20800: CA264_20800 - hypothetical protein, at 20,829 to 21,056
_20800
CA264_20805: CA264_20805 - hypothetical protein, at 21,043 to 21,324
_20805
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 18.295 kb on + strand, within CA264_20780 at 18.296 kb on - strand, within CA264_20780 at 18.298 kb on + strand, within CA264_20780 at 18.299 kb on - strand, within CA264_20780 at 18.328 kb on - strand, within CA264_20780 at 18.371 kb on - strand, within CA264_20780 at 18.372 kb on + strand, within CA264_20780 at 18.373 kb on - strand, within CA264_20780 at 18.373 kb on - strand, within CA264_20780 at 18.398 kb on + strand, within CA264_20780 at 18.398 kb on + strand, within CA264_20780 at 18.399 kb on - strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.428 kb on - strand, within CA264_20780 at 18.428 kb on - strand, within CA264_20780 at 18.446 kb on - strand, within CA264_20780 at 18.527 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.530 kb on - strand at 18.557 kb on - strand at 18.571 kb on + strand at 18.571 kb on + strand at 18.572 kb on - strand at 18.589 kb on + strand at 18.590 kb on - strand at 18.601 kb on + strand at 18.602 kb on - strand at 18.607 kb on + strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.615 kb on + strand at 18.616 kb on - strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.639 kb on - strand at 18.639 kb on - strand at 18.642 kb on + strand at 18.643 kb on - strand at 18.647 kb on + strand at 18.710 kb on + strand at 18.732 kb on + strand at 18.759 kb on - strand at 18.823 kb on + strand at 18.825 kb on + strand at 18.825 kb on + strand at 18.826 kb on - strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.864 kb on - strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.901 kb on - strand at 18.901 kb on - strand at 18.912 kb on + strand at 18.913 kb on - strand at 18.955 kb on - strand, within CA264_20785 at 18.973 kb on + strand, within CA264_20785 at 18.974 kb on - strand, within CA264_20785 at 19.051 kb on + strand, within CA264_20785 at 19.051 kb on + strand, within CA264_20785 at 19.162 kb on + strand, within CA264_20785 at 19.163 kb on - strand, within CA264_20785 at 19.164 kb on + strand, within CA264_20785 at 19.165 kb on - strand, within CA264_20785 at 19.165 kb on - strand, within CA264_20785 at 19.166 kb on + strand, within CA264_20785 at 19.166 kb on + strand, within CA264_20785 at 19.218 kb on - strand at 19.241 kb on + strand at 19.246 kb on + strand at 19.246 kb on + strand at 19.247 kb on - strand at 19.247 kb on - strand at 19.247 kb on - strand at 19.282 kb on + strand at 19.283 kb on - strand at 19.421 kb on + strand, within CA264_20790 at 19.421 kb on + strand, within CA264_20790 at 19.422 kb on - strand, within CA264_20790 at 19.441 kb on + strand, within CA264_20790 at 19.475 kb on + strand, within CA264_20790 at 19.475 kb on + strand, within CA264_20790 at 19.476 kb on - strand, within CA264_20790 at 19.476 kb on - strand, within CA264_20790 at 19.519 kb on + strand, within CA264_20790 at 19.691 kb on - strand, within CA264_20790 at 19.736 kb on - strand, within CA264_20790 at 19.758 kb on + strand, within CA264_20790 at 19.758 kb on + strand, within CA264_20790 at 19.759 kb on - strand, within CA264_20790 at 19.879 kb on - strand, within CA264_20790 at 20.021 kb on - strand at 20.036 kb on - strand, within CA264_20790 at 20.153 kb on + strand, within CA264_20790 at 20.163 kb on - strand, within CA264_20790 at 20.173 kb on + strand, within CA264_20790 at 20.299 kb on + strand at 20.299 kb on + strand at 20.299 kb on + strand at 20.313 kb on + strand at 20.313 kb on + strand at 20.313 kb on + strand at 20.314 kb on - strand at 20.360 kb on + strand at 20.361 kb on - strand at 20.361 kb on - strand at 20.365 kb on - strand at 20.365 kb on - strand at 20.367 kb on - strand at 20.367 kb on - strand at 20.432 kb on + strand at 20.432 kb on + strand at 20.438 kb on + strand at 20.438 kb on + strand at 20.464 kb on + strand at 20.464 kb on + strand at 20.465 kb on - strand at 20.465 kb on - strand at 20.465 kb on - strand at 20.546 kb on + strand at 20.547 kb on - strand at 20.566 kb on + strand at 20.573 kb on + strand at 20.573 kb on + strand at 20.573 kb on + strand at 20.574 kb on - strand at 20.574 kb on - strand at 20.615 kb on + strand, within CA264_20795 at 20.615 kb on + strand, within CA264_20795 at 20.616 kb on - strand, within CA264_20795 at 20.639 kb on + strand, within CA264_20795 at 20.641 kb on + strand, within CA264_20795 at 20.641 kb on + strand, within CA264_20795 at 20.641 kb on + strand, within CA264_20795 at 20.664 kb on + strand, within CA264_20795 at 20.668 kb on + strand, within CA264_20795 at 20.697 kb on + strand, within CA264_20795 at 20.717 kb on - strand, within CA264_20795 at 20.766 kb on + strand, within CA264_20795 at 20.766 kb on + strand, within CA264_20795 at 20.766 kb on + strand, within CA264_20795 at 20.806 kb on + strand at 20.820 kb on + strand at 20.820 kb on + strand at 20.821 kb on - strand at 20.821 kb on - strand at 20.821 kb on - strand at 20.843 kb on - strand at 20.864 kb on + strand, within CA264_20800 at 20.864 kb on + strand, within CA264_20800 at 20.865 kb on - strand, within CA264_20800 at 20.865 kb on - strand, within CA264_20800 at 20.865 kb on - strand, within CA264_20800 at 21.042 kb on + strand at 21.042 kb on + strand at 21.042 kb on + strand at 21.059 kb on + strand at 21.060 kb on - strand at 21.151 kb on - strand, within CA264_20805 at 21.234 kb on - strand, within CA264_20805 at 21.253 kb on - strand, within CA264_20805 at 21.253 kb on - strand, within CA264_20805 at 21.258 kb on - strand, within CA264_20805 at 21.269 kb on + strand, within CA264_20805
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 18,295 + CA264_20780 0.79 +0.4 18,296 - CA264_20780 0.79 +0.1 18,298 + CA264_20780 0.79 +0.0 18,299 - CA264_20780 0.79 -0.7 18,328 - CA264_20780 0.81 -0.4 18,371 - CA264_20780 0.84 +1.1 18,372 + CA264_20780 0.84 +0.2 18,373 - CA264_20780 0.84 +0.4 18,373 - CA264_20780 0.84 +0.4 18,398 + CA264_20780 0.85 +0.6 18,398 + CA264_20780 0.85 +0.4 18,399 - CA264_20780 0.86 -0.2 18,413 + CA264_20780 0.86 +1.4 18,413 + CA264_20780 0.86 +1.1 18,413 + CA264_20780 0.86 -0.2 18,413 + CA264_20780 0.86 +0.5 18,427 + CA264_20780 0.87 -0.5 18,427 + CA264_20780 0.87 +0.5 18,427 + CA264_20780 0.87 +0.1 18,428 - CA264_20780 0.87 -1.1 18,428 - CA264_20780 0.87 +0.0 18,446 - CA264_20780 0.88 +0.4 18,527 + -0.2 18,529 + -0.6 18,529 + +0.7 18,530 - -1.4 18,557 - -1.0 18,571 + -0.1 18,571 + +0.5 18,572 - -0.6 18,589 + -1.7 18,590 - +3.4 18,601 + +2.1 18,602 - -0.5 18,607 + -0.7 18,608 - -0.6 18,608 - -0.1 18,608 - +0.0 18,608 - +0.2 18,615 + -0.9 18,616 - -1.2 18,638 + +0.2 18,638 + -0.4 18,638 + +0.6 18,638 + +0.1 18,639 - -0.0 18,639 - +0.4 18,642 + +0.1 18,643 - -0.2 18,647 + -0.2 18,710 + -0.1 18,732 + -0.4 18,759 - -0.3 18,823 + +1.0 18,825 + +0.2 18,825 + +0.2 18,826 - +0.4 18,863 + +0.4 18,863 + -0.4 18,863 + +1.4 18,863 + -0.2 18,864 - -0.4 18,900 + +0.5 18,900 + -0.2 18,900 + -1.1 18,900 + -0.6 18,901 - +0.4 18,901 - -0.8 18,912 + -0.4 18,913 - +0.2 18,955 - CA264_20785 0.21 -0.3 18,973 + CA264_20785 0.26 -0.4 18,974 - CA264_20785 0.26 +0.4 19,051 + CA264_20785 0.49 -0.5 19,051 + CA264_20785 0.49 +0.5 19,162 + CA264_20785 0.80 -0.1 19,163 - CA264_20785 0.81 +0.1 19,164 + CA264_20785 0.81 -1.8 19,165 - CA264_20785 0.81 +0.1 19,165 - CA264_20785 0.81 +1.1 19,166 + CA264_20785 0.82 +0.8 19,166 + CA264_20785 0.82 -0.3 19,218 - +0.1 19,241 + +0.1 19,246 + +0.6 19,246 + -0.2 19,247 - +0.5 19,247 - -0.0 19,247 - -0.4 19,282 + -0.1 19,283 - +0.0 19,421 + CA264_20790 0.14 -0.8 19,421 + CA264_20790 0.14 +0.5 19,422 - CA264_20790 0.14 -0.1 19,441 + CA264_20790 0.16 +0.4 19,475 + CA264_20790 0.19 +0.3 19,475 + CA264_20790 0.19 -0.6 19,476 - CA264_20790 0.19 +0.2 19,476 - CA264_20790 0.19 -0.9 19,519 + CA264_20790 0.23 -0.5 19,691 - CA264_20790 0.40 +0.5 19,736 - CA264_20790 0.44 +0.8 19,758 + CA264_20790 0.46 +2.9 19,758 + CA264_20790 0.46 +0.1 19,759 - CA264_20790 0.47 -0.6 19,879 - CA264_20790 0.58 -2.1 20,021 - +0.6 20,036 - CA264_20790 0.73 +1.8 20,153 + CA264_20790 0.84 +0.1 20,163 - CA264_20790 0.85 -0.8 20,173 + CA264_20790 0.86 -0.3 20,299 + +0.1 20,299 + +0.4 20,299 + +0.1 20,313 + +0.4 20,313 + -0.3 20,313 + -0.4 20,314 - -0.6 20,360 + +0.4 20,361 - -1.5 20,361 - -1.8 20,365 - -0.2 20,365 - +0.6 20,367 - +0.5 20,367 - +0.2 20,432 + +1.0 20,432 + +0.6 20,438 + +1.6 20,438 + -0.1 20,464 + +1.4 20,464 + +0.4 20,465 - +0.0 20,465 - -1.5 20,465 - +0.4 20,546 + -0.8 20,547 - +1.4 20,566 + -0.5 20,573 + +2.4 20,573 + +0.2 20,573 + -0.2 20,574 - -1.5 20,574 - -0.2 20,615 + CA264_20795 0.17 -0.2 20,615 + CA264_20795 0.17 -0.4 20,616 - CA264_20795 0.17 -1.1 20,639 + CA264_20795 0.27 +0.4 20,641 + CA264_20795 0.28 +0.2 20,641 + CA264_20795 0.28 +0.9 20,641 + CA264_20795 0.28 +0.0 20,664 + CA264_20795 0.37 -1.2 20,668 + CA264_20795 0.39 +0.9 20,697 + CA264_20795 0.51 -1.0 20,717 - CA264_20795 0.59 -1.2 20,766 + CA264_20795 0.79 -0.2 20,766 + CA264_20795 0.79 -0.3 20,766 + CA264_20795 0.79 -1.5 20,806 + -1.0 20,820 + -0.2 20,820 + +0.1 20,821 - +0.4 20,821 - +1.4 20,821 - +1.9 20,843 - -0.3 20,864 + CA264_20800 0.15 -0.2 20,864 + CA264_20800 0.15 -0.5 20,865 - CA264_20800 0.16 -0.2 20,865 - CA264_20800 0.16 -2.0 20,865 - CA264_20800 0.16 -0.5 21,042 + -0.7 21,042 + +0.5 21,042 + -0.0 21,059 + -0.6 21,060 - -1.0 21,151 - CA264_20805 0.38 +1.4 21,234 - CA264_20805 0.68 +0.5 21,253 - CA264_20805 0.74 -0.7 21,253 - CA264_20805 0.74 +0.4 21,258 - CA264_20805 0.76 +0.2 21,269 + CA264_20805 0.80 +1.4
Or see this region's nucleotide sequence