Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20250

Experiment: Ponti_ML7_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20240 and CA264_20245 overlap by 26 nucleotidesCA264_20245 and CA264_20250 are separated by 4 nucleotidesCA264_20250 and CA264_20255 are separated by 64 nucleotidesCA264_20255 and CA264_20260 overlap by 4 nucleotides CA264_20240: CA264_20240 - hypothetical protein, at 4,670,280 to 4,670,981 _20240 CA264_20245: CA264_20245 - hypothetical protein, at 4,670,956 to 4,671,810 _20245 CA264_20250: CA264_20250 - transcriptional regulator, at 4,671,815 to 4,672,255 _20250 CA264_20255: CA264_20255 - hypothetical protein, at 4,672,320 to 4,672,859 _20255 CA264_20260: CA264_20260 - hypothetical protein, at 4,672,856 to 4,673,812 _20260 Position (kb) 4671 4672 4673Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4670.818 kb on + strand, within CA264_20240at 4670.819 kb on - strand, within CA264_20240at 4670.829 kb on + strand, within CA264_20240at 4670.830 kb on - strand, within CA264_20240at 4670.862 kb on + strand, within CA264_20240at 4670.866 kb on - strand, within CA264_20240at 4670.866 kb on - strand, within CA264_20240at 4670.900 kb on - strand, within CA264_20240at 4670.948 kb on + strandat 4670.948 kb on + strandat 4671.032 kb on + strandat 4671.127 kb on + strand, within CA264_20245at 4671.127 kb on + strand, within CA264_20245at 4671.146 kb on + strand, within CA264_20245at 4671.147 kb on - strand, within CA264_20245at 4671.286 kb on + strand, within CA264_20245at 4671.320 kb on - strand, within CA264_20245at 4671.320 kb on - strand, within CA264_20245at 4671.330 kb on + strand, within CA264_20245at 4671.341 kb on - strand, within CA264_20245at 4671.409 kb on + strand, within CA264_20245at 4671.410 kb on - strand, within CA264_20245at 4671.430 kb on + strand, within CA264_20245at 4671.431 kb on - strand, within CA264_20245at 4671.431 kb on - strand, within CA264_20245at 4671.475 kb on - strand, within CA264_20245at 4671.512 kb on - strand, within CA264_20245at 4671.627 kb on + strand, within CA264_20245at 4671.685 kb on + strand, within CA264_20245at 4671.686 kb on - strand, within CA264_20245at 4671.686 kb on - strand, within CA264_20245at 4671.705 kb on - strand, within CA264_20245at 4671.726 kb on - strandat 4671.756 kb on + strandat 4671.756 kb on + strandat 4671.770 kb on + strandat 4671.797 kb on + strandat 4671.803 kb on + strandat 4671.804 kb on - strandat 4671.808 kb on + strandat 4671.809 kb on - strandat 4671.809 kb on - strandat 4671.809 kb on - strandat 4671.809 kb on - strandat 4671.814 kb on + strandat 4671.826 kb on - strandat 4671.826 kb on - strandat 4671.831 kb on + strandat 4671.888 kb on + strand, within CA264_20250at 4671.963 kb on + strand, within CA264_20250at 4671.963 kb on + strand, within CA264_20250at 4671.963 kb on + strand, within CA264_20250at 4671.964 kb on - strand, within CA264_20250at 4672.019 kb on - strand, within CA264_20250at 4672.022 kb on - strand, within CA264_20250at 4672.039 kb on + strand, within CA264_20250at 4672.039 kb on + strand, within CA264_20250at 4672.040 kb on - strand, within CA264_20250at 4672.104 kb on + strand, within CA264_20250at 4672.105 kb on - strand, within CA264_20250at 4672.105 kb on - strand, within CA264_20250at 4672.159 kb on - strand, within CA264_20250at 4672.167 kb on + strand, within CA264_20250at 4672.167 kb on + strand, within CA264_20250at 4672.191 kb on - strand, within CA264_20250at 4672.243 kb on - strandat 4672.253 kb on + strandat 4672.282 kb on - strandat 4672.312 kb on + strandat 4672.312 kb on + strandat 4672.313 kb on - strandat 4672.313 kb on - strandat 4672.313 kb on - strandat 4672.313 kb on - strandat 4672.316 kb on + strandat 4672.317 kb on - strandat 4672.321 kb on + strandat 4672.335 kb on + strandat 4672.457 kb on - strand, within CA264_20255at 4672.457 kb on - strand, within CA264_20255at 4672.481 kb on + strand, within CA264_20255at 4672.482 kb on - strand, within CA264_20255at 4672.509 kb on + strand, within CA264_20255at 4672.510 kb on - strand, within CA264_20255at 4672.591 kb on + strand, within CA264_20255at 4672.628 kb on + strand, within CA264_20255at 4672.658 kb on - strand, within CA264_20255at 4672.729 kb on + strand, within CA264_20255at 4672.730 kb on - strand, within CA264_20255at 4672.730 kb on - strand, within CA264_20255at 4672.860 kb on - strandat 4672.976 kb on - strand, within CA264_20260at 4672.991 kb on - strand, within CA264_20260at 4673.026 kb on + strand, within CA264_20260at 4673.026 kb on + strand, within CA264_20260at 4673.038 kb on + strand, within CA264_20260at 4673.039 kb on - strand, within CA264_20260at 4673.113 kb on + strand, within CA264_20260at 4673.211 kb on + strand, within CA264_20260at 4673.212 kb on - strand, within CA264_20260at 4673.212 kb on - strand, within CA264_20260at 4673.212 kb on - strand, within CA264_20260at 4673.217 kb on + strand, within CA264_20260

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Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
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4,670,818 + CA264_20240 0.77 -0.5
4,670,819 - CA264_20240 0.77 +1.3
4,670,829 + CA264_20240 0.78 +0.4
4,670,830 - CA264_20240 0.78 +0.5
4,670,862 + CA264_20240 0.83 -0.2
4,670,866 - CA264_20240 0.83 +0.4
4,670,866 - CA264_20240 0.83 +0.7
4,670,900 - CA264_20240 0.88 -1.4
4,670,948 + -0.1
4,670,948 + +0.0
4,671,032 + +0.9
4,671,127 + CA264_20245 0.20 +0.1
4,671,127 + CA264_20245 0.20 -1.4
4,671,146 + CA264_20245 0.22 +1.3
4,671,147 - CA264_20245 0.22 +0.1
4,671,286 + CA264_20245 0.39 -0.8
4,671,320 - CA264_20245 0.43 -0.1
4,671,320 - CA264_20245 0.43 +0.4
4,671,330 + CA264_20245 0.44 -2.1
4,671,341 - CA264_20245 0.45 +0.8
4,671,409 + CA264_20245 0.53 -0.3
4,671,410 - CA264_20245 0.53 -0.6
4,671,430 + CA264_20245 0.55 -0.5
4,671,431 - CA264_20245 0.56 +0.1
4,671,431 - CA264_20245 0.56 +0.9
4,671,475 - CA264_20245 0.61 -0.1
4,671,512 - CA264_20245 0.65 +0.9
4,671,627 + CA264_20245 0.78 -1.2
4,671,685 + CA264_20245 0.85 +0.1
4,671,686 - CA264_20245 0.85 -0.8
4,671,686 - CA264_20245 0.85 +0.5
4,671,705 - CA264_20245 0.88 -1.1
4,671,726 - -0.2
4,671,756 + -1.6
4,671,756 + +0.1
4,671,770 + +0.6
4,671,797 + +0.2
4,671,803 + +0.2
4,671,804 - +3.5
4,671,808 + -0.1
4,671,809 - -0.5
4,671,809 - +0.9
4,671,809 - -0.6
4,671,809 - +0.7
4,671,814 + -0.3
4,671,826 - -0.2
4,671,826 - +0.9
4,671,831 + -0.3
4,671,888 + CA264_20250 0.17 +0.9
4,671,963 + CA264_20250 0.34 +1.3
4,671,963 + CA264_20250 0.34 -0.1
4,671,963 + CA264_20250 0.34 -1.4
4,671,964 - CA264_20250 0.34 -0.4
4,672,019 - CA264_20250 0.46 +0.1
4,672,022 - CA264_20250 0.47 -0.9
4,672,039 + CA264_20250 0.51 +0.3
4,672,039 + CA264_20250 0.51 -1.5
4,672,040 - CA264_20250 0.51 -0.7
4,672,104 + CA264_20250 0.66 -0.4
4,672,105 - CA264_20250 0.66 -0.1
4,672,105 - CA264_20250 0.66 +0.2
4,672,159 - CA264_20250 0.78 +0.4
4,672,167 + CA264_20250 0.80 +0.0
4,672,167 + CA264_20250 0.80 -0.4
4,672,191 - CA264_20250 0.85 -0.1
4,672,243 - -1.6
4,672,253 + -0.6
4,672,282 - +0.8
4,672,312 + +0.5
4,672,312 + +0.5
4,672,313 - -0.2
4,672,313 - -2.2
4,672,313 - -0.1
4,672,313 - -0.6
4,672,316 + +0.2
4,672,317 - +1.4
4,672,321 + +0.9
4,672,335 + -1.6
4,672,457 - CA264_20255 0.25 -0.1
4,672,457 - CA264_20255 0.25 -2.3
4,672,481 + CA264_20255 0.30 -0.5
4,672,482 - CA264_20255 0.30 +0.0
4,672,509 + CA264_20255 0.35 -0.2
4,672,510 - CA264_20255 0.35 -0.7
4,672,591 + CA264_20255 0.50 +0.4
4,672,628 + CA264_20255 0.57 -1.4
4,672,658 - CA264_20255 0.63 -1.1
4,672,729 + CA264_20255 0.76 -0.1
4,672,730 - CA264_20255 0.76 +0.0
4,672,730 - CA264_20255 0.76 -0.1
4,672,860 - -0.1
4,672,976 - CA264_20260 0.13 +0.2
4,672,991 - CA264_20260 0.14 -1.2
4,673,026 + CA264_20260 0.18 -0.6
4,673,026 + CA264_20260 0.18 +0.9
4,673,038 + CA264_20260 0.19 +0.2
4,673,039 - CA264_20260 0.19 -1.3
4,673,113 + CA264_20260 0.27 -0.1
4,673,211 + CA264_20260 0.37 -0.3
4,673,212 - CA264_20260 0.37 -0.5
4,673,212 - CA264_20260 0.37 -1.4
4,673,212 - CA264_20260 0.37 +1.2
4,673,217 + CA264_20260 0.38 +0.2

Or see this region's nucleotide sequence