Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20020

Experiment: Ponti_ML7_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20015 and CA264_20020 are separated by 340 nucleotidesCA264_20020 and CA264_20025 are separated by 36 nucleotides CA264_20015: CA264_20015 - Signal peptidase-like protein, at 4,613,793 to 4,615,244 _20015 CA264_20020: CA264_20020 - hypothetical protein, at 4,615,585 to 4,617,009 _20020 CA264_20025: CA264_20025 - glutathione-dependent formaldehyde dehydrogenase, at 4,617,046 to 4,618,203 _20025 Position (kb) 4615 4616 4617 4618Strain fitness (log2 ratio) -1 0 1 2 3at 4615.355 kb on + strandat 4615.355 kb on + strandat 4615.378 kb on + strandat 4615.378 kb on + strandat 4615.379 kb on - strandat 4615.379 kb on - strandat 4615.379 kb on - strandat 4615.379 kb on - strandat 4615.380 kb on + strandat 4615.381 kb on - strandat 4615.382 kb on + strandat 4615.383 kb on - strandat 4615.386 kb on + strandat 4615.387 kb on - strandat 4615.387 kb on - strandat 4615.387 kb on - strandat 4615.425 kb on - strandat 4615.425 kb on - strandat 4615.430 kb on - strandat 4615.466 kb on + strandat 4615.472 kb on + strandat 4615.472 kb on + strandat 4615.472 kb on + strandat 4615.560 kb on + strandat 4615.682 kb on - strandat 4615.686 kb on - strandat 4615.789 kb on - strand, within CA264_20020at 4615.934 kb on + strand, within CA264_20020at 4615.971 kb on + strand, within CA264_20020at 4616.040 kb on + strand, within CA264_20020at 4616.041 kb on - strand, within CA264_20020at 4616.074 kb on + strand, within CA264_20020at 4616.101 kb on + strand, within CA264_20020at 4616.116 kb on + strand, within CA264_20020at 4616.116 kb on + strand, within CA264_20020at 4616.117 kb on - strand, within CA264_20020at 4616.161 kb on + strand, within CA264_20020at 4616.162 kb on - strand, within CA264_20020at 4616.292 kb on + strand, within CA264_20020at 4616.292 kb on + strand, within CA264_20020at 4616.386 kb on - strand, within CA264_20020at 4616.417 kb on - strand, within CA264_20020at 4616.612 kb on - strand, within CA264_20020at 4616.618 kb on - strand, within CA264_20020at 4616.788 kb on + strand, within CA264_20020at 4616.789 kb on - strand, within CA264_20020at 4616.793 kb on - strand, within CA264_20020at 4616.846 kb on - strand, within CA264_20020at 4616.985 kb on + strandat 4616.985 kb on + strandat 4617.007 kb on + strandat 4617.007 kb on + strandat 4617.027 kb on + strandat 4617.028 kb on - strandat 4617.048 kb on - strandat 4617.055 kb on + strandat 4617.055 kb on + strandat 4617.067 kb on + strandat 4617.088 kb on - strandat 4617.101 kb on + strandat 4617.133 kb on - strandat 4617.139 kb on - strandat 4617.141 kb on + strandat 4617.142 kb on - strandat 4617.142 kb on - strandat 4617.183 kb on - strand, within CA264_20025at 4617.273 kb on - strand, within CA264_20025at 4617.292 kb on + strand, within CA264_20025at 4617.428 kb on - strand, within CA264_20025at 4617.428 kb on - strand, within CA264_20025at 4617.433 kb on + strand, within CA264_20025at 4617.433 kb on + strand, within CA264_20025at 4617.434 kb on - strand, within CA264_20025at 4617.434 kb on - strand, within CA264_20025at 4617.434 kb on - strand, within CA264_20025at 4617.468 kb on + strand, within CA264_20025at 4617.478 kb on + strand, within CA264_20025at 4617.479 kb on - strand, within CA264_20025at 4617.479 kb on - strand, within CA264_20025at 4617.584 kb on - strand, within CA264_20025at 4617.779 kb on + strand, within CA264_20025at 4617.780 kb on - strand, within CA264_20025at 4617.934 kb on - strand, within CA264_20025

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Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
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4,615,355 + +0.6
4,615,355 + +1.5
4,615,378 + -0.6
4,615,378 + +0.0
4,615,379 - -1.1
4,615,379 - -0.7
4,615,379 - +0.1
4,615,379 - +0.1
4,615,380 + +0.1
4,615,381 - +0.2
4,615,382 + +0.4
4,615,383 - +0.1
4,615,386 + -0.2
4,615,387 - +0.6
4,615,387 - -0.2
4,615,387 - +0.3
4,615,425 - +1.2
4,615,425 - +0.9
4,615,430 - +2.1
4,615,466 + -0.0
4,615,472 + +1.4
4,615,472 + +0.3
4,615,472 + +0.4
4,615,560 + +0.3
4,615,682 - +0.4
4,615,686 - -0.6
4,615,789 - CA264_20020 0.14 +0.2
4,615,934 + CA264_20020 0.24 -0.6
4,615,971 + CA264_20020 0.27 +1.2
4,616,040 + CA264_20020 0.32 -1.4
4,616,041 - CA264_20020 0.32 +0.6
4,616,074 + CA264_20020 0.34 -0.1
4,616,101 + CA264_20020 0.36 +0.9
4,616,116 + CA264_20020 0.37 +0.9
4,616,116 + CA264_20020 0.37 +0.3
4,616,117 - CA264_20020 0.37 -0.6
4,616,161 + CA264_20020 0.40 +2.3
4,616,162 - CA264_20020 0.40 -1.2
4,616,292 + CA264_20020 0.50 -0.0
4,616,292 + CA264_20020 0.50 -0.1
4,616,386 - CA264_20020 0.56 +3.3
4,616,417 - CA264_20020 0.58 +0.7
4,616,612 - CA264_20020 0.72 +0.8
4,616,618 - CA264_20020 0.72 +0.3
4,616,788 + CA264_20020 0.84 +0.5
4,616,789 - CA264_20020 0.84 +1.5
4,616,793 - CA264_20020 0.85 +0.9
4,616,846 - CA264_20020 0.88 +0.2
4,616,985 + +0.9
4,616,985 + -0.4
4,617,007 + +0.2
4,617,007 + +0.5
4,617,027 + -0.6
4,617,028 - +0.2
4,617,048 - +0.5
4,617,055 + -0.5
4,617,055 + +0.3
4,617,067 + -0.1
4,617,088 - -0.1
4,617,101 + +0.5
4,617,133 - +1.8
4,617,139 - -0.6
4,617,141 + -0.3
4,617,142 - -0.1
4,617,142 - +1.5
4,617,183 - CA264_20025 0.12 +0.7
4,617,273 - CA264_20025 0.20 -0.6
4,617,292 + CA264_20025 0.21 +0.2
4,617,428 - CA264_20025 0.33 -0.1
4,617,428 - CA264_20025 0.33 -0.4
4,617,433 + CA264_20025 0.33 -0.1
4,617,433 + CA264_20025 0.33 +0.4
4,617,434 - CA264_20025 0.34 -0.3
4,617,434 - CA264_20025 0.34 -0.6
4,617,434 - CA264_20025 0.34 +0.6
4,617,468 + CA264_20025 0.36 -0.4
4,617,478 + CA264_20025 0.37 +0.1
4,617,479 - CA264_20025 0.37 -0.3
4,617,479 - CA264_20025 0.37 +0.1
4,617,584 - CA264_20025 0.46 -0.3
4,617,779 + CA264_20025 0.63 +2.5
4,617,780 - CA264_20025 0.63 +0.2
4,617,934 - CA264_20025 0.77 -0.6

Or see this region's nucleotide sequence