Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20015 and CA264_20020 are separated by 340 nucleotides CA264_20020 and CA264_20025 are separated by 36 nucleotides
CA264_20015: CA264_20015 - Signal peptidase-like protein, at 4,613,793 to 4,615,244
_20015
CA264_20020: CA264_20020 - hypothetical protein, at 4,615,585 to 4,617,009
_20020
CA264_20025: CA264_20025 - glutathione-dependent formaldehyde dehydrogenase, at 4,617,046 to 4,618,203
_20025
Position (kb)
4615
4616
4617
4618 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4615.355 kb on + strand at 4615.355 kb on + strand at 4615.378 kb on + strand at 4615.378 kb on + strand at 4615.379 kb on - strand at 4615.379 kb on - strand at 4615.379 kb on - strand at 4615.379 kb on - strand at 4615.380 kb on + strand at 4615.381 kb on - strand at 4615.382 kb on + strand at 4615.383 kb on - strand at 4615.386 kb on + strand at 4615.387 kb on - strand at 4615.387 kb on - strand at 4615.387 kb on - strand at 4615.425 kb on - strand at 4615.425 kb on - strand at 4615.430 kb on - strand at 4615.466 kb on + strand at 4615.472 kb on + strand at 4615.472 kb on + strand at 4615.472 kb on + strand at 4615.560 kb on + strand at 4615.682 kb on - strand at 4615.686 kb on - strand at 4615.789 kb on - strand, within CA264_20020 at 4615.934 kb on + strand, within CA264_20020 at 4615.971 kb on + strand, within CA264_20020 at 4616.040 kb on + strand, within CA264_20020 at 4616.041 kb on - strand, within CA264_20020 at 4616.074 kb on + strand, within CA264_20020 at 4616.101 kb on + strand, within CA264_20020 at 4616.116 kb on + strand, within CA264_20020 at 4616.116 kb on + strand, within CA264_20020 at 4616.117 kb on - strand, within CA264_20020 at 4616.161 kb on + strand, within CA264_20020 at 4616.162 kb on - strand, within CA264_20020 at 4616.292 kb on + strand, within CA264_20020 at 4616.292 kb on + strand, within CA264_20020 at 4616.386 kb on - strand, within CA264_20020 at 4616.417 kb on - strand, within CA264_20020 at 4616.612 kb on - strand, within CA264_20020 at 4616.618 kb on - strand, within CA264_20020 at 4616.788 kb on + strand, within CA264_20020 at 4616.789 kb on - strand, within CA264_20020 at 4616.793 kb on - strand, within CA264_20020 at 4616.846 kb on - strand, within CA264_20020 at 4616.985 kb on + strand at 4616.985 kb on + strand at 4617.007 kb on + strand at 4617.007 kb on + strand at 4617.027 kb on + strand at 4617.028 kb on - strand at 4617.048 kb on - strand at 4617.055 kb on + strand at 4617.055 kb on + strand at 4617.067 kb on + strand at 4617.088 kb on - strand at 4617.101 kb on + strand at 4617.133 kb on - strand at 4617.139 kb on - strand at 4617.141 kb on + strand at 4617.142 kb on - strand at 4617.142 kb on - strand at 4617.183 kb on - strand, within CA264_20025 at 4617.273 kb on - strand, within CA264_20025 at 4617.292 kb on + strand, within CA264_20025 at 4617.428 kb on - strand, within CA264_20025 at 4617.428 kb on - strand, within CA264_20025 at 4617.433 kb on + strand, within CA264_20025 at 4617.433 kb on + strand, within CA264_20025 at 4617.434 kb on - strand, within CA264_20025 at 4617.434 kb on - strand, within CA264_20025 at 4617.434 kb on - strand, within CA264_20025 at 4617.468 kb on + strand, within CA264_20025 at 4617.478 kb on + strand, within CA264_20025 at 4617.479 kb on - strand, within CA264_20025 at 4617.479 kb on - strand, within CA264_20025 at 4617.584 kb on - strand, within CA264_20025 at 4617.779 kb on + strand, within CA264_20025 at 4617.780 kb on - strand, within CA264_20025 at 4617.934 kb on - strand, within CA264_20025
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 4,615,355 + +0.6 4,615,355 + +1.5 4,615,378 + -0.6 4,615,378 + +0.0 4,615,379 - -1.1 4,615,379 - -0.7 4,615,379 - +0.1 4,615,379 - +0.1 4,615,380 + +0.1 4,615,381 - +0.2 4,615,382 + +0.4 4,615,383 - +0.1 4,615,386 + -0.2 4,615,387 - +0.6 4,615,387 - -0.2 4,615,387 - +0.3 4,615,425 - +1.2 4,615,425 - +0.9 4,615,430 - +2.1 4,615,466 + -0.0 4,615,472 + +1.4 4,615,472 + +0.3 4,615,472 + +0.4 4,615,560 + +0.3 4,615,682 - +0.4 4,615,686 - -0.6 4,615,789 - CA264_20020 0.14 +0.2 4,615,934 + CA264_20020 0.24 -0.6 4,615,971 + CA264_20020 0.27 +1.2 4,616,040 + CA264_20020 0.32 -1.4 4,616,041 - CA264_20020 0.32 +0.6 4,616,074 + CA264_20020 0.34 -0.1 4,616,101 + CA264_20020 0.36 +0.9 4,616,116 + CA264_20020 0.37 +0.9 4,616,116 + CA264_20020 0.37 +0.3 4,616,117 - CA264_20020 0.37 -0.6 4,616,161 + CA264_20020 0.40 +2.3 4,616,162 - CA264_20020 0.40 -1.2 4,616,292 + CA264_20020 0.50 -0.0 4,616,292 + CA264_20020 0.50 -0.1 4,616,386 - CA264_20020 0.56 +3.3 4,616,417 - CA264_20020 0.58 +0.7 4,616,612 - CA264_20020 0.72 +0.8 4,616,618 - CA264_20020 0.72 +0.3 4,616,788 + CA264_20020 0.84 +0.5 4,616,789 - CA264_20020 0.84 +1.5 4,616,793 - CA264_20020 0.85 +0.9 4,616,846 - CA264_20020 0.88 +0.2 4,616,985 + +0.9 4,616,985 + -0.4 4,617,007 + +0.2 4,617,007 + +0.5 4,617,027 + -0.6 4,617,028 - +0.2 4,617,048 - +0.5 4,617,055 + -0.5 4,617,055 + +0.3 4,617,067 + -0.1 4,617,088 - -0.1 4,617,101 + +0.5 4,617,133 - +1.8 4,617,139 - -0.6 4,617,141 + -0.3 4,617,142 - -0.1 4,617,142 - +1.5 4,617,183 - CA264_20025 0.12 +0.7 4,617,273 - CA264_20025 0.20 -0.6 4,617,292 + CA264_20025 0.21 +0.2 4,617,428 - CA264_20025 0.33 -0.1 4,617,428 - CA264_20025 0.33 -0.4 4,617,433 + CA264_20025 0.33 -0.1 4,617,433 + CA264_20025 0.33 +0.4 4,617,434 - CA264_20025 0.34 -0.3 4,617,434 - CA264_20025 0.34 -0.6 4,617,434 - CA264_20025 0.34 +0.6 4,617,468 + CA264_20025 0.36 -0.4 4,617,478 + CA264_20025 0.37 +0.1 4,617,479 - CA264_20025 0.37 -0.3 4,617,479 - CA264_20025 0.37 +0.1 4,617,584 - CA264_20025 0.46 -0.3 4,617,779 + CA264_20025 0.63 +2.5 4,617,780 - CA264_20025 0.63 +0.2 4,617,934 - CA264_20025 0.77 -0.6
Or see this region's nucleotide sequence