Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19980 and CA264_19985 are separated by 113 nucleotides CA264_19985 and CA264_19990 are separated by 96 nucleotides
CA264_19980: CA264_19980 - hypothetical protein, at 4,607,413 to 4,608,261
_19980
CA264_19985: CA264_19985 - NAD(P)-dependent oxidoreductase, at 4,608,375 to 4,609,250
_19985
CA264_19990: CA264_19990 - hypothetical protein, at 4,609,347 to 4,610,702
_19990
Position (kb)
4608
4609
4610 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4607.375 kb on + strand at 4607.376 kb on - strand at 4607.376 kb on - strand at 4607.376 kb on - strand at 4607.420 kb on - strand at 4607.426 kb on + strand at 4607.427 kb on - strand at 4607.437 kb on + strand at 4607.512 kb on - strand, within CA264_19980 at 4607.552 kb on + strand, within CA264_19980 at 4607.592 kb on + strand, within CA264_19980 at 4607.592 kb on + strand, within CA264_19980 at 4607.592 kb on + strand, within CA264_19980 at 4607.593 kb on - strand, within CA264_19980 at 4607.593 kb on - strand, within CA264_19980 at 4607.725 kb on + strand, within CA264_19980 at 4607.726 kb on - strand, within CA264_19980 at 4607.731 kb on + strand, within CA264_19980 at 4607.732 kb on - strand, within CA264_19980 at 4607.732 kb on - strand, within CA264_19980 at 4607.825 kb on - strand, within CA264_19980 at 4607.918 kb on - strand, within CA264_19980 at 4607.965 kb on - strand, within CA264_19980 at 4607.965 kb on - strand, within CA264_19980 at 4607.965 kb on - strand, within CA264_19980 at 4608.003 kb on - strand, within CA264_19980 at 4608.093 kb on - strand, within CA264_19980 at 4608.143 kb on - strand, within CA264_19980 at 4608.155 kb on + strand, within CA264_19980 at 4608.155 kb on + strand, within CA264_19980 at 4608.210 kb on + strand at 4608.271 kb on + strand at 4608.271 kb on + strand at 4608.284 kb on - strand at 4608.302 kb on - strand at 4608.304 kb on + strand at 4608.351 kb on + strand at 4608.353 kb on + strand at 4608.353 kb on + strand at 4608.353 kb on + strand at 4608.353 kb on + strand at 4608.354 kb on - strand at 4608.354 kb on - strand at 4608.354 kb on - strand at 4608.354 kb on - strand at 4608.354 kb on - strand at 4608.354 kb on - strand at 4608.357 kb on + strand at 4608.357 kb on + strand at 4608.358 kb on - strand at 4608.358 kb on - strand at 4608.358 kb on - strand at 4608.381 kb on - strand at 4608.381 kb on - strand at 4608.388 kb on + strand at 4608.389 kb on - strand at 4608.391 kb on + strand at 4608.392 kb on - strand at 4608.392 kb on - strand at 4608.392 kb on - strand at 4608.460 kb on + strand at 4608.460 kb on + strand at 4608.467 kb on - strand, within CA264_19985 at 4608.478 kb on + strand, within CA264_19985 at 4608.523 kb on + strand, within CA264_19985 at 4608.625 kb on + strand, within CA264_19985 at 4608.757 kb on - strand, within CA264_19985 at 4608.776 kb on + strand, within CA264_19985 at 4608.780 kb on + strand, within CA264_19985 at 4608.816 kb on + strand, within CA264_19985 at 4608.816 kb on + strand, within CA264_19985 at 4608.817 kb on - strand, within CA264_19985 at 4608.825 kb on + strand, within CA264_19985 at 4608.825 kb on + strand, within CA264_19985 at 4608.886 kb on + strand, within CA264_19985 at 4608.887 kb on - strand, within CA264_19985 at 4608.887 kb on - strand, within CA264_19985 at 4608.891 kb on + strand, within CA264_19985 at 4608.892 kb on - strand, within CA264_19985 at 4608.892 kb on - strand, within CA264_19985 at 4608.892 kb on - strand, within CA264_19985 at 4608.896 kb on - strand, within CA264_19985 at 4608.925 kb on + strand, within CA264_19985 at 4608.963 kb on + strand, within CA264_19985 at 4608.992 kb on + strand, within CA264_19985 at 4608.993 kb on - strand, within CA264_19985 at 4608.997 kb on - strand, within CA264_19985 at 4609.046 kb on + strand, within CA264_19985 at 4609.131 kb on + strand, within CA264_19985 at 4609.272 kb on - strand at 4609.330 kb on + strand at 4609.330 kb on + strand at 4609.330 kb on + strand at 4609.330 kb on + strand at 4609.331 kb on - strand at 4609.335 kb on + strand at 4609.384 kb on + strand at 4609.465 kb on + strand at 4609.466 kb on - strand at 4609.466 kb on - strand at 4609.469 kb on - strand at 4609.469 kb on - strand at 4609.694 kb on + strand, within CA264_19990 at 4609.805 kb on + strand, within CA264_19990 at 4609.808 kb on + strand, within CA264_19990 at 4609.808 kb on - strand, within CA264_19990 at 4610.017 kb on + strand, within CA264_19990 at 4610.018 kb on - strand, within CA264_19990 at 4610.041 kb on + strand, within CA264_19990 at 4610.042 kb on - strand, within CA264_19990 at 4610.056 kb on + strand, within CA264_19990 at 4610.056 kb on + strand, within CA264_19990 at 4610.057 kb on - strand, within CA264_19990 at 4610.120 kb on - strand, within CA264_19990 at 4610.155 kb on + strand, within CA264_19990 at 4610.155 kb on + strand, within CA264_19990 at 4610.156 kb on - strand, within CA264_19990 at 4610.239 kb on + strand, within CA264_19990 at 4610.239 kb on + strand, within CA264_19990
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 4,607,375 + -0.6 4,607,376 - -0.0 4,607,376 - -0.2 4,607,376 - +0.9 4,607,420 - +0.7 4,607,426 + +0.2 4,607,427 - -0.2 4,607,437 + -0.3 4,607,512 - CA264_19980 0.12 -0.7 4,607,552 + CA264_19980 0.16 -0.9 4,607,592 + CA264_19980 0.21 -0.5 4,607,592 + CA264_19980 0.21 +1.7 4,607,592 + CA264_19980 0.21 -0.6 4,607,593 - CA264_19980 0.21 +0.3 4,607,593 - CA264_19980 0.21 +0.8 4,607,725 + CA264_19980 0.37 -0.9 4,607,726 - CA264_19980 0.37 -0.1 4,607,731 + CA264_19980 0.37 -0.6 4,607,732 - CA264_19980 0.38 +0.5 4,607,732 - CA264_19980 0.38 +0.9 4,607,825 - CA264_19980 0.49 -0.3 4,607,918 - CA264_19980 0.59 +0.0 4,607,965 - CA264_19980 0.65 -0.7 4,607,965 - CA264_19980 0.65 +0.5 4,607,965 - CA264_19980 0.65 +0.9 4,608,003 - CA264_19980 0.69 -0.4 4,608,093 - CA264_19980 0.80 -0.1 4,608,143 - CA264_19980 0.86 +0.4 4,608,155 + CA264_19980 0.87 +0.9 4,608,155 + CA264_19980 0.87 -0.4 4,608,210 + -0.0 4,608,271 + -0.5 4,608,271 + -1.1 4,608,284 - +0.2 4,608,302 - -1.9 4,608,304 + +0.3 4,608,351 + +0.8 4,608,353 + -0.2 4,608,353 + +0.2 4,608,353 + -0.3 4,608,353 + -0.6 4,608,354 - -0.1 4,608,354 - -1.9 4,608,354 - +0.2 4,608,354 - +0.3 4,608,354 - +0.5 4,608,354 - -0.1 4,608,357 + +0.6 4,608,357 + -0.1 4,608,358 - -0.1 4,608,358 - +0.4 4,608,358 - +0.2 4,608,381 - -0.5 4,608,381 - +0.3 4,608,388 + +0.1 4,608,389 - -0.5 4,608,391 + +2.5 4,608,392 - -0.1 4,608,392 - +0.7 4,608,392 - +0.5 4,608,460 + -0.4 4,608,460 + -0.3 4,608,467 - CA264_19985 0.11 -1.2 4,608,478 + CA264_19985 0.12 -0.1 4,608,523 + CA264_19985 0.17 +1.8 4,608,625 + CA264_19985 0.29 -0.6 4,608,757 - CA264_19985 0.44 -0.4 4,608,776 + CA264_19985 0.46 -0.0 4,608,780 + CA264_19985 0.46 -0.1 4,608,816 + CA264_19985 0.50 +0.1 4,608,816 + CA264_19985 0.50 -0.6 4,608,817 - CA264_19985 0.50 +0.4 4,608,825 + CA264_19985 0.51 +0.0 4,608,825 + CA264_19985 0.51 -0.2 4,608,886 + CA264_19985 0.58 -0.6 4,608,887 - CA264_19985 0.58 -0.1 4,608,887 - CA264_19985 0.58 -0.3 4,608,891 + CA264_19985 0.59 -0.8 4,608,892 - CA264_19985 0.59 -0.5 4,608,892 - CA264_19985 0.59 +0.1 4,608,892 - CA264_19985 0.59 -0.9 4,608,896 - CA264_19985 0.59 -0.4 4,608,925 + CA264_19985 0.63 -0.6 4,608,963 + CA264_19985 0.67 +0.2 4,608,992 + CA264_19985 0.70 -1.3 4,608,993 - CA264_19985 0.71 -0.4 4,608,997 - CA264_19985 0.71 -1.7 4,609,046 + CA264_19985 0.77 -1.1 4,609,131 + CA264_19985 0.86 +0.3 4,609,272 - -0.4 4,609,330 + +0.1 4,609,330 + -0.9 4,609,330 + -0.6 4,609,330 + +0.3 4,609,331 - -0.6 4,609,335 + -2.2 4,609,384 + +0.2 4,609,465 + -1.6 4,609,466 - +0.3 4,609,466 - -0.6 4,609,469 - -0.0 4,609,469 - +0.1 4,609,694 + CA264_19990 0.26 -0.4 4,609,805 + CA264_19990 0.34 -0.1 4,609,808 + CA264_19990 0.34 -0.1 4,609,808 - CA264_19990 0.34 +0.4 4,610,017 + CA264_19990 0.49 -1.1 4,610,018 - CA264_19990 0.49 -0.3 4,610,041 + CA264_19990 0.51 +0.1 4,610,042 - CA264_19990 0.51 -0.4 4,610,056 + CA264_19990 0.52 +1.9 4,610,056 + CA264_19990 0.52 -0.5 4,610,057 - CA264_19990 0.52 +0.2 4,610,120 - CA264_19990 0.57 +0.3 4,610,155 + CA264_19990 0.60 -0.6 4,610,155 + CA264_19990 0.60 +0.1 4,610,156 - CA264_19990 0.60 +0.8 4,610,239 + CA264_19990 0.66 +0.2 4,610,239 + CA264_19990 0.66 -0.0
Or see this region's nucleotide sequence