Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19530 and CA264_19535 are separated by 4 nucleotides CA264_19535 and CA264_19540 are separated by 178 nucleotides CA264_19540 and CA264_19545 are separated by 103 nucleotides
CA264_19530: CA264_19530 - hypothetical protein, at 4,513,091 to 4,513,534
_19530
CA264_19535: CA264_19535 - hypothetical protein, at 4,513,539 to 4,514,108
_19535
CA264_19540: CA264_19540 - hypothetical protein, at 4,514,287 to 4,515,126
_19540
CA264_19545: CA264_19545 - oxidoreductase, at 4,515,230 to 4,516,123
_19545
Position (kb)
4514
4515
4516 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4513.289 kb on + strand, within CA264_19530 at 4513.290 kb on - strand, within CA264_19530 at 4513.290 kb on - strand, within CA264_19530 at 4513.290 kb on - strand, within CA264_19530 at 4513.290 kb on - strand, within CA264_19530 at 4513.296 kb on + strand, within CA264_19530 at 4513.296 kb on + strand, within CA264_19530 at 4513.297 kb on - strand, within CA264_19530 at 4513.297 kb on - strand, within CA264_19530 at 4513.300 kb on - strand, within CA264_19530 at 4513.483 kb on - strand, within CA264_19530 at 4513.527 kb on + strand at 4513.527 kb on + strand at 4513.527 kb on + strand at 4513.564 kb on + strand at 4513.564 kb on + strand at 4513.677 kb on - strand, within CA264_19535 at 4513.677 kb on - strand, within CA264_19535 at 4513.732 kb on + strand, within CA264_19535 at 4513.733 kb on - strand, within CA264_19535 at 4513.802 kb on + strand, within CA264_19535 at 4513.803 kb on - strand, within CA264_19535 at 4513.833 kb on + strand, within CA264_19535 at 4513.850 kb on + strand, within CA264_19535 at 4513.979 kb on + strand, within CA264_19535 at 4513.979 kb on + strand, within CA264_19535 at 4514.043 kb on + strand, within CA264_19535 at 4514.043 kb on + strand, within CA264_19535 at 4514.150 kb on + strand at 4514.165 kb on + strand at 4514.209 kb on - strand at 4514.244 kb on + strand at 4514.284 kb on + strand at 4514.288 kb on + strand at 4514.315 kb on + strand at 4514.345 kb on + strand at 4514.451 kb on + strand, within CA264_19540 at 4514.533 kb on - strand, within CA264_19540 at 4514.534 kb on + strand, within CA264_19540 at 4514.535 kb on - strand, within CA264_19540 at 4514.593 kb on + strand, within CA264_19540 at 4514.645 kb on - strand, within CA264_19540 at 4514.648 kb on + strand, within CA264_19540 at 4514.648 kb on + strand, within CA264_19540 at 4514.649 kb on - strand, within CA264_19540 at 4514.652 kb on + strand, within CA264_19540 at 4514.652 kb on + strand, within CA264_19540 at 4514.653 kb on - strand, within CA264_19540 at 4514.653 kb on - strand, within CA264_19540 at 4514.681 kb on + strand, within CA264_19540 at 4514.701 kb on + strand, within CA264_19540 at 4514.816 kb on + strand, within CA264_19540 at 4514.816 kb on + strand, within CA264_19540 at 4514.816 kb on + strand, within CA264_19540 at 4514.817 kb on - strand, within CA264_19540 at 4514.873 kb on - strand, within CA264_19540 at 4514.925 kb on + strand, within CA264_19540 at 4514.956 kb on - strand, within CA264_19540 at 4514.964 kb on + strand, within CA264_19540 at 4514.964 kb on + strand, within CA264_19540 at 4514.964 kb on + strand, within CA264_19540 at 4514.965 kb on - strand, within CA264_19540 at 4514.976 kb on + strand, within CA264_19540 at 4514.977 kb on - strand, within CA264_19540 at 4515.001 kb on - strand, within CA264_19540 at 4515.001 kb on - strand, within CA264_19540 at 4515.003 kb on + strand, within CA264_19540 at 4515.004 kb on - strand, within CA264_19540 at 4515.012 kb on + strand, within CA264_19540 at 4515.013 kb on - strand, within CA264_19540 at 4515.056 kb on + strand at 4515.057 kb on - strand at 4515.075 kb on + strand at 4515.147 kb on + strand at 4515.148 kb on - strand at 4515.155 kb on + strand at 4515.165 kb on + strand at 4515.165 kb on + strand at 4515.172 kb on - strand at 4515.204 kb on + strand at 4515.213 kb on - strand at 4515.231 kb on + strand at 4515.231 kb on + strand at 4515.248 kb on - strand at 4515.301 kb on - strand at 4515.399 kb on - strand, within CA264_19545 at 4515.505 kb on - strand, within CA264_19545 at 4515.534 kb on + strand, within CA264_19545 at 4515.551 kb on + strand, within CA264_19545 at 4515.568 kb on - strand, within CA264_19545 at 4515.671 kb on + strand, within CA264_19545 at 4515.715 kb on + strand, within CA264_19545 at 4515.774 kb on + strand, within CA264_19545 at 4515.778 kb on + strand, within CA264_19545 at 4515.779 kb on - strand, within CA264_19545 at 4515.824 kb on - strand, within CA264_19545 at 4515.868 kb on - strand, within CA264_19545 at 4515.868 kb on - strand, within CA264_19545 at 4515.868 kb on - strand, within CA264_19545 at 4515.868 kb on - strand, within CA264_19545 at 4515.868 kb on - strand, within CA264_19545 at 4515.873 kb on + strand, within CA264_19545 at 4516.032 kb on + strand, within CA264_19545 at 4516.033 kb on - strand, within CA264_19545 at 4516.035 kb on + strand at 4516.036 kb on - strand at 4516.119 kb on + strand at 4516.119 kb on + strand at 4516.120 kb on - strand at 4516.123 kb on + strand at 4516.124 kb on - strand at 4516.124 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 4,513,289 + CA264_19530 0.45 +0.6 4,513,290 - CA264_19530 0.45 +0.4 4,513,290 - CA264_19530 0.45 -1.2 4,513,290 - CA264_19530 0.45 +2.6 4,513,290 - CA264_19530 0.45 +0.7 4,513,296 + CA264_19530 0.46 -0.2 4,513,296 + CA264_19530 0.46 +0.0 4,513,297 - CA264_19530 0.46 -1.3 4,513,297 - CA264_19530 0.46 -0.5 4,513,300 - CA264_19530 0.47 +0.6 4,513,483 - CA264_19530 0.88 +1.2 4,513,527 + +0.8 4,513,527 + -0.3 4,513,527 + +0.0 4,513,564 + -0.0 4,513,564 + -0.0 4,513,677 - CA264_19535 0.24 -0.3 4,513,677 - CA264_19535 0.24 -0.8 4,513,732 + CA264_19535 0.34 +0.4 4,513,733 - CA264_19535 0.34 +1.4 4,513,802 + CA264_19535 0.46 +0.4 4,513,803 - CA264_19535 0.46 +0.4 4,513,833 + CA264_19535 0.52 +1.0 4,513,850 + CA264_19535 0.55 +2.0 4,513,979 + CA264_19535 0.77 -0.2 4,513,979 + CA264_19535 0.77 -1.0 4,514,043 + CA264_19535 0.88 -0.0 4,514,043 + CA264_19535 0.88 +0.8 4,514,150 + +2.0 4,514,165 + +0.0 4,514,209 - +0.1 4,514,244 + -0.4 4,514,284 + -0.4 4,514,288 + -0.3 4,514,315 + -0.9 4,514,345 + -0.5 4,514,451 + CA264_19540 0.20 +0.1 4,514,533 - CA264_19540 0.29 -0.3 4,514,534 + CA264_19540 0.29 +1.0 4,514,535 - CA264_19540 0.30 -0.3 4,514,593 + CA264_19540 0.36 -0.5 4,514,645 - CA264_19540 0.43 -0.0 4,514,648 + CA264_19540 0.43 -0.7 4,514,648 + CA264_19540 0.43 -0.9 4,514,649 - CA264_19540 0.43 -0.4 4,514,652 + CA264_19540 0.43 +0.1 4,514,652 + CA264_19540 0.43 -0.5 4,514,653 - CA264_19540 0.44 +0.2 4,514,653 - CA264_19540 0.44 -0.0 4,514,681 + CA264_19540 0.47 +0.3 4,514,701 + CA264_19540 0.49 -1.0 4,514,816 + CA264_19540 0.63 +0.5 4,514,816 + CA264_19540 0.63 -0.4 4,514,816 + CA264_19540 0.63 -0.4 4,514,817 - CA264_19540 0.63 -0.5 4,514,873 - CA264_19540 0.70 +0.2 4,514,925 + CA264_19540 0.76 -0.8 4,514,956 - CA264_19540 0.80 +2.2 4,514,964 + CA264_19540 0.81 -0.1 4,514,964 + CA264_19540 0.81 +0.5 4,514,964 + CA264_19540 0.81 +0.5 4,514,965 - CA264_19540 0.81 -0.6 4,514,976 + CA264_19540 0.82 -0.1 4,514,977 - CA264_19540 0.82 -1.4 4,515,001 - CA264_19540 0.85 -0.8 4,515,001 - CA264_19540 0.85 -0.1 4,515,003 + CA264_19540 0.85 -0.4 4,515,004 - CA264_19540 0.85 -0.6 4,515,012 + CA264_19540 0.86 -0.3 4,515,013 - CA264_19540 0.86 +0.2 4,515,056 + -2.3 4,515,057 - +0.1 4,515,075 + -2.3 4,515,147 + -1.4 4,515,148 - -0.7 4,515,155 + +0.2 4,515,165 + +0.6 4,515,165 + -0.9 4,515,172 - +0.2 4,515,204 + -0.2 4,515,213 - -0.1 4,515,231 + +0.2 4,515,231 + -0.1 4,515,248 - +0.5 4,515,301 - +1.3 4,515,399 - CA264_19545 0.19 +0.4 4,515,505 - CA264_19545 0.31 -1.2 4,515,534 + CA264_19545 0.34 +0.1 4,515,551 + CA264_19545 0.36 -1.5 4,515,568 - CA264_19545 0.38 +0.9 4,515,671 + CA264_19545 0.49 +2.3 4,515,715 + CA264_19545 0.54 -0.7 4,515,774 + CA264_19545 0.61 -0.0 4,515,778 + CA264_19545 0.61 -2.9 4,515,779 - CA264_19545 0.61 +0.4 4,515,824 - CA264_19545 0.66 +0.2 4,515,868 - CA264_19545 0.71 +1.0 4,515,868 - CA264_19545 0.71 -0.1 4,515,868 - CA264_19545 0.71 -0.6 4,515,868 - CA264_19545 0.71 -0.4 4,515,868 - CA264_19545 0.71 +0.1 4,515,873 + CA264_19545 0.72 +0.6 4,516,032 + CA264_19545 0.90 +2.5 4,516,033 - CA264_19545 0.90 +0.1 4,516,035 + -0.2 4,516,036 - -0.1 4,516,119 + +0.5 4,516,119 + +2.0 4,516,120 - -0.4 4,516,123 + +0.0 4,516,124 - +0.8 4,516,124 - -0.6
Or see this region's nucleotide sequence