Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19090 and CA264_19095 are separated by 274 nucleotides CA264_19095 and CA264_19100 are separated by 383 nucleotides
CA264_19090: CA264_19090 - hypothetical protein, at 4,435,244 to 4,436,938
_19090
CA264_19095: CA264_19095 - hypothetical protein, at 4,437,213 to 4,437,584
_19095
CA264_19100: CA264_19100 - hypothetical protein, at 4,437,968 to 4,439,365
_19100
Position (kb)
4437
4438 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4436.495 kb on - strand, within CA264_19090 at 4436.589 kb on - strand, within CA264_19090 at 4436.913 kb on - strand at 4437.048 kb on + strand at 4437.061 kb on - strand at 4437.086 kb on + strand at 4437.087 kb on - strand at 4437.118 kb on - strand at 4437.122 kb on + strand at 4437.122 kb on + strand at 4437.122 kb on + strand at 4437.122 kb on + strand at 4437.123 kb on - strand at 4437.123 kb on - strand at 4437.136 kb on + strand at 4437.137 kb on - strand at 4437.160 kb on + strand at 4437.161 kb on - strand at 4437.228 kb on + strand at 4437.345 kb on + strand, within CA264_19095 at 4437.346 kb on - strand, within CA264_19095 at 4437.424 kb on - strand, within CA264_19095 at 4437.438 kb on - strand, within CA264_19095 at 4437.475 kb on + strand, within CA264_19095 at 4437.493 kb on + strand, within CA264_19095 at 4437.493 kb on + strand, within CA264_19095 at 4437.582 kb on + strand at 4437.600 kb on + strand at 4437.601 kb on - strand at 4437.608 kb on - strand at 4437.617 kb on - strand at 4437.617 kb on - strand at 4437.635 kb on - strand at 4437.672 kb on + strand at 4437.760 kb on - strand at 4437.770 kb on + strand at 4437.771 kb on - strand at 4437.793 kb on - strand at 4437.815 kb on - strand at 4437.821 kb on - strand at 4437.821 kb on - strand at 4437.837 kb on - strand at 4437.850 kb on + strand at 4437.852 kb on + strand at 4437.856 kb on + strand at 4437.858 kb on + strand at 4437.911 kb on - strand at 4437.965 kb on + strand at 4437.965 kb on + strand at 4437.965 kb on + strand at 4437.966 kb on - strand at 4437.966 kb on - strand at 4437.966 kb on - strand at 4437.966 kb on - strand at 4437.967 kb on + strand at 4437.968 kb on - strand at 4437.968 kb on - strand at 4437.970 kb on - strand at 4437.973 kb on - strand at 4438.003 kb on + strand at 4438.009 kb on + strand at 4438.010 kb on - strand at 4438.010 kb on - strand at 4438.090 kb on - strand at 4438.115 kb on - strand, within CA264_19100 at 4438.131 kb on + strand, within CA264_19100 at 4438.131 kb on + strand, within CA264_19100 at 4438.132 kb on - strand, within CA264_19100 at 4438.142 kb on - strand, within CA264_19100 at 4438.165 kb on + strand, within CA264_19100 at 4438.200 kb on - strand, within CA264_19100 at 4438.234 kb on + strand, within CA264_19100 at 4438.290 kb on - strand, within CA264_19100 at 4438.290 kb on - strand, within CA264_19100 at 4438.290 kb on - strand, within CA264_19100 at 4438.298 kb on - strand, within CA264_19100 at 4438.328 kb on + strand, within CA264_19100 at 4438.328 kb on + strand, within CA264_19100 at 4438.328 kb on + strand, within CA264_19100 at 4438.329 kb on - strand, within CA264_19100 at 4438.329 kb on - strand, within CA264_19100 at 4438.329 kb on - strand, within CA264_19100 at 4438.331 kb on + strand, within CA264_19100 at 4438.332 kb on - strand, within CA264_19100 at 4438.332 kb on - strand, within CA264_19100 at 4438.358 kb on + strand, within CA264_19100 at 4438.368 kb on - strand, within CA264_19100 at 4438.476 kb on + strand, within CA264_19100 at 4438.476 kb on + strand, within CA264_19100 at 4438.476 kb on + strand, within CA264_19100 at 4438.477 kb on - strand, within CA264_19100 at 4438.477 kb on - strand, within CA264_19100
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 4,436,495 - CA264_19090 0.74 +2.8 4,436,589 - CA264_19090 0.79 +0.3 4,436,913 - -0.9 4,437,048 + +0.4 4,437,061 - +0.0 4,437,086 + -0.3 4,437,087 - -0.4 4,437,118 - +1.1 4,437,122 + +0.2 4,437,122 + +0.4 4,437,122 + -0.2 4,437,122 + +0.2 4,437,123 - -0.9 4,437,123 - -3.2 4,437,136 + -0.2 4,437,137 - -0.4 4,437,160 + -0.1 4,437,161 - +1.0 4,437,228 + +0.8 4,437,345 + CA264_19095 0.35 +0.8 4,437,346 - CA264_19095 0.36 -1.1 4,437,424 - CA264_19095 0.57 -0.8 4,437,438 - CA264_19095 0.60 +0.8 4,437,475 + CA264_19095 0.70 -0.8 4,437,493 + CA264_19095 0.75 +0.1 4,437,493 + CA264_19095 0.75 -1.4 4,437,582 + -0.1 4,437,600 + -0.3 4,437,601 - +0.4 4,437,608 - -1.9 4,437,617 - +0.5 4,437,617 - +4.4 4,437,635 - +0.6 4,437,672 + +0.4 4,437,760 - +0.6 4,437,770 + +0.6 4,437,771 - +0.2 4,437,793 - -0.9 4,437,815 - +0.3 4,437,821 - -0.3 4,437,821 - -0.4 4,437,837 - +0.2 4,437,850 + -0.2 4,437,852 + -0.5 4,437,856 + -0.2 4,437,858 + +0.1 4,437,911 - -0.4 4,437,965 + +2.5 4,437,965 + -0.1 4,437,965 + +0.9 4,437,966 - -0.5 4,437,966 - -0.9 4,437,966 - +1.6 4,437,966 - -0.8 4,437,967 + +0.2 4,437,968 - +0.5 4,437,968 - -1.1 4,437,970 - -0.8 4,437,973 - +0.1 4,438,003 + +0.5 4,438,009 + +0.0 4,438,010 - -0.4 4,438,010 - +0.2 4,438,090 - -0.3 4,438,115 - CA264_19100 0.11 -0.2 4,438,131 + CA264_19100 0.12 -1.4 4,438,131 + CA264_19100 0.12 -0.1 4,438,132 - CA264_19100 0.12 -0.1 4,438,142 - CA264_19100 0.12 +0.4 4,438,165 + CA264_19100 0.14 +0.1 4,438,200 - CA264_19100 0.17 +0.5 4,438,234 + CA264_19100 0.19 +0.3 4,438,290 - CA264_19100 0.23 -1.0 4,438,290 - CA264_19100 0.23 -0.0 4,438,290 - CA264_19100 0.23 -0.6 4,438,298 - CA264_19100 0.24 +0.1 4,438,328 + CA264_19100 0.26 +0.2 4,438,328 + CA264_19100 0.26 -0.7 4,438,328 + CA264_19100 0.26 +0.6 4,438,329 - CA264_19100 0.26 -0.6 4,438,329 - CA264_19100 0.26 +0.4 4,438,329 - CA264_19100 0.26 -1.3 4,438,331 + CA264_19100 0.26 -0.1 4,438,332 - CA264_19100 0.26 -0.3 4,438,332 - CA264_19100 0.26 +0.5 4,438,358 + CA264_19100 0.28 +0.3 4,438,368 - CA264_19100 0.29 -0.1 4,438,476 + CA264_19100 0.36 -0.6 4,438,476 + CA264_19100 0.36 -1.6 4,438,476 + CA264_19100 0.36 +0.9 4,438,477 - CA264_19100 0.36 -1.1 4,438,477 - CA264_19100 0.36 +1.3
Or see this region's nucleotide sequence