Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19095

Experiment: Ponti_ML7_MIT diversity barseq

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_19090 and CA264_19095 are separated by 274 nucleotidesCA264_19095 and CA264_19100 are separated by 383 nucleotides CA264_19090: CA264_19090 - hypothetical protein, at 4,435,244 to 4,436,938 _19090 CA264_19095: CA264_19095 - hypothetical protein, at 4,437,213 to 4,437,584 _19095 CA264_19100: CA264_19100 - hypothetical protein, at 4,437,968 to 4,439,365 _19100 Position (kb) 4437 4438Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4436.495 kb on - strand, within CA264_19090at 4436.589 kb on - strand, within CA264_19090at 4436.913 kb on - strandat 4437.048 kb on + strandat 4437.061 kb on - strandat 4437.086 kb on + strandat 4437.087 kb on - strandat 4437.118 kb on - strandat 4437.122 kb on + strandat 4437.122 kb on + strandat 4437.122 kb on + strandat 4437.122 kb on + strandat 4437.123 kb on - strandat 4437.123 kb on - strandat 4437.136 kb on + strandat 4437.137 kb on - strandat 4437.160 kb on + strandat 4437.161 kb on - strandat 4437.228 kb on + strandat 4437.345 kb on + strand, within CA264_19095at 4437.346 kb on - strand, within CA264_19095at 4437.424 kb on - strand, within CA264_19095at 4437.438 kb on - strand, within CA264_19095at 4437.475 kb on + strand, within CA264_19095at 4437.493 kb on + strand, within CA264_19095at 4437.493 kb on + strand, within CA264_19095at 4437.582 kb on + strandat 4437.600 kb on + strandat 4437.601 kb on - strandat 4437.608 kb on - strandat 4437.617 kb on - strandat 4437.617 kb on - strandat 4437.635 kb on - strandat 4437.672 kb on + strandat 4437.760 kb on - strandat 4437.770 kb on + strandat 4437.771 kb on - strandat 4437.793 kb on - strandat 4437.815 kb on - strandat 4437.821 kb on - strandat 4437.821 kb on - strandat 4437.837 kb on - strandat 4437.850 kb on + strandat 4437.852 kb on + strandat 4437.856 kb on + strandat 4437.858 kb on + strandat 4437.911 kb on - strandat 4437.965 kb on + strandat 4437.965 kb on + strandat 4437.965 kb on + strandat 4437.966 kb on - strandat 4437.966 kb on - strandat 4437.966 kb on - strandat 4437.966 kb on - strandat 4437.967 kb on + strandat 4437.968 kb on - strandat 4437.968 kb on - strandat 4437.970 kb on - strandat 4437.973 kb on - strandat 4438.003 kb on + strandat 4438.009 kb on + strandat 4438.010 kb on - strandat 4438.010 kb on - strandat 4438.090 kb on - strandat 4438.115 kb on - strand, within CA264_19100at 4438.131 kb on + strand, within CA264_19100at 4438.131 kb on + strand, within CA264_19100at 4438.132 kb on - strand, within CA264_19100at 4438.142 kb on - strand, within CA264_19100at 4438.165 kb on + strand, within CA264_19100at 4438.200 kb on - strand, within CA264_19100at 4438.234 kb on + strand, within CA264_19100at 4438.290 kb on - strand, within CA264_19100at 4438.290 kb on - strand, within CA264_19100at 4438.290 kb on - strand, within CA264_19100at 4438.298 kb on - strand, within CA264_19100at 4438.328 kb on + strand, within CA264_19100at 4438.328 kb on + strand, within CA264_19100at 4438.328 kb on + strand, within CA264_19100at 4438.329 kb on - strand, within CA264_19100at 4438.329 kb on - strand, within CA264_19100at 4438.329 kb on - strand, within CA264_19100at 4438.331 kb on + strand, within CA264_19100at 4438.332 kb on - strand, within CA264_19100at 4438.332 kb on - strand, within CA264_19100at 4438.358 kb on + strand, within CA264_19100at 4438.368 kb on - strand, within CA264_19100at 4438.476 kb on + strand, within CA264_19100at 4438.476 kb on + strand, within CA264_19100at 4438.476 kb on + strand, within CA264_19100at 4438.477 kb on - strand, within CA264_19100at 4438.477 kb on - strand, within CA264_19100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
remove
4,436,495 - CA264_19090 0.74 +2.8
4,436,589 - CA264_19090 0.79 +0.3
4,436,913 - -0.9
4,437,048 + +0.4
4,437,061 - +0.0
4,437,086 + -0.3
4,437,087 - -0.4
4,437,118 - +1.1
4,437,122 + +0.2
4,437,122 + +0.4
4,437,122 + -0.2
4,437,122 + +0.2
4,437,123 - -0.9
4,437,123 - -3.2
4,437,136 + -0.2
4,437,137 - -0.4
4,437,160 + -0.1
4,437,161 - +1.0
4,437,228 + +0.8
4,437,345 + CA264_19095 0.35 +0.8
4,437,346 - CA264_19095 0.36 -1.1
4,437,424 - CA264_19095 0.57 -0.8
4,437,438 - CA264_19095 0.60 +0.8
4,437,475 + CA264_19095 0.70 -0.8
4,437,493 + CA264_19095 0.75 +0.1
4,437,493 + CA264_19095 0.75 -1.4
4,437,582 + -0.1
4,437,600 + -0.3
4,437,601 - +0.4
4,437,608 - -1.9
4,437,617 - +0.5
4,437,617 - +4.4
4,437,635 - +0.6
4,437,672 + +0.4
4,437,760 - +0.6
4,437,770 + +0.6
4,437,771 - +0.2
4,437,793 - -0.9
4,437,815 - +0.3
4,437,821 - -0.3
4,437,821 - -0.4
4,437,837 - +0.2
4,437,850 + -0.2
4,437,852 + -0.5
4,437,856 + -0.2
4,437,858 + +0.1
4,437,911 - -0.4
4,437,965 + +2.5
4,437,965 + -0.1
4,437,965 + +0.9
4,437,966 - -0.5
4,437,966 - -0.9
4,437,966 - +1.6
4,437,966 - -0.8
4,437,967 + +0.2
4,437,968 - +0.5
4,437,968 - -1.1
4,437,970 - -0.8
4,437,973 - +0.1
4,438,003 + +0.5
4,438,009 + +0.0
4,438,010 - -0.4
4,438,010 - +0.2
4,438,090 - -0.3
4,438,115 - CA264_19100 0.11 -0.2
4,438,131 + CA264_19100 0.12 -1.4
4,438,131 + CA264_19100 0.12 -0.1
4,438,132 - CA264_19100 0.12 -0.1
4,438,142 - CA264_19100 0.12 +0.4
4,438,165 + CA264_19100 0.14 +0.1
4,438,200 - CA264_19100 0.17 +0.5
4,438,234 + CA264_19100 0.19 +0.3
4,438,290 - CA264_19100 0.23 -1.0
4,438,290 - CA264_19100 0.23 -0.0
4,438,290 - CA264_19100 0.23 -0.6
4,438,298 - CA264_19100 0.24 +0.1
4,438,328 + CA264_19100 0.26 +0.2
4,438,328 + CA264_19100 0.26 -0.7
4,438,328 + CA264_19100 0.26 +0.6
4,438,329 - CA264_19100 0.26 -0.6
4,438,329 - CA264_19100 0.26 +0.4
4,438,329 - CA264_19100 0.26 -1.3
4,438,331 + CA264_19100 0.26 -0.1
4,438,332 - CA264_19100 0.26 -0.3
4,438,332 - CA264_19100 0.26 +0.5
4,438,358 + CA264_19100 0.28 +0.3
4,438,368 - CA264_19100 0.29 -0.1
4,438,476 + CA264_19100 0.36 -0.6
4,438,476 + CA264_19100 0.36 -1.6
4,438,476 + CA264_19100 0.36 +0.9
4,438,477 - CA264_19100 0.36 -1.1
4,438,477 - CA264_19100 0.36 +1.3

Or see this region's nucleotide sequence