Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18955

Experiment: Ponti_ML7_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18945 and CA264_18950 are separated by 300 nucleotidesCA264_18950 and CA264_18955 are separated by 218 nucleotidesCA264_18955 and CA264_18960 are separated by 5 nucleotides CA264_18945: CA264_18945 - hypothetical protein, at 4,398,061 to 4,398,267 _18945 CA264_18950: CA264_18950 - hypothetical protein, at 4,398,568 to 4,398,945 _18950 CA264_18955: CA264_18955 - cytochrome C, at 4,399,164 to 4,399,517 _18955 CA264_18960: CA264_18960 - glucose dehydrogenase, at 4,399,523 to 4,400,980 _18960 Position (kb) 4399 4400Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4398.253 kb on + strandat 4398.254 kb on - strandat 4398.258 kb on + strandat 4398.258 kb on + strandat 4398.258 kb on + strandat 4398.258 kb on + strandat 4398.259 kb on - strandat 4398.259 kb on - strandat 4398.292 kb on + strandat 4398.292 kb on + strandat 4398.292 kb on + strandat 4398.292 kb on + strandat 4398.292 kb on + strandat 4398.293 kb on - strandat 4398.293 kb on - strandat 4398.293 kb on - strandat 4398.293 kb on - strandat 4398.296 kb on + strandat 4398.296 kb on + strandat 4398.296 kb on + strandat 4398.296 kb on + strandat 4398.296 kb on + strandat 4398.297 kb on - strandat 4398.297 kb on - strandat 4398.297 kb on - strandat 4398.297 kb on - strandat 4398.297 kb on - strandat 4398.297 kb on - strandat 4398.297 kb on - strandat 4398.300 kb on + strandat 4398.300 kb on + strandat 4398.301 kb on - strandat 4398.301 kb on - strandat 4398.302 kb on + strandat 4398.302 kb on + strandat 4398.303 kb on - strandat 4398.319 kb on + strandat 4398.417 kb on - strandat 4398.417 kb on - strandat 4398.431 kb on + strandat 4398.431 kb on + strandat 4398.432 kb on - strandat 4398.432 kb on - strandat 4398.434 kb on - strandat 4398.435 kb on + strandat 4398.462 kb on + strandat 4398.486 kb on + strandat 4398.530 kb on + strandat 4398.530 kb on + strandat 4398.563 kb on + strandat 4398.605 kb on + strandat 4398.608 kb on + strand, within CA264_18950at 4398.615 kb on + strand, within CA264_18950at 4398.616 kb on - strand, within CA264_18950at 4398.781 kb on + strand, within CA264_18950at 4398.781 kb on + strand, within CA264_18950at 4398.782 kb on - strand, within CA264_18950at 4398.809 kb on - strand, within CA264_18950at 4398.849 kb on - strand, within CA264_18950at 4398.852 kb on - strand, within CA264_18950at 4398.853 kb on + strand, within CA264_18950at 4398.854 kb on - strand, within CA264_18950at 4398.959 kb on - strandat 4398.960 kb on + strandat 4398.960 kb on + strandat 4398.961 kb on - strandat 4398.961 kb on - strandat 4398.961 kb on - strandat 4398.963 kb on + strandat 4398.964 kb on - strandat 4399.045 kb on + strandat 4399.074 kb on + strandat 4399.092 kb on - strandat 4399.130 kb on + strandat 4399.135 kb on - strandat 4399.158 kb on - strandat 4399.165 kb on + strandat 4399.197 kb on - strandat 4399.202 kb on - strand, within CA264_18955at 4399.202 kb on - strand, within CA264_18955at 4399.210 kb on - strand, within CA264_18955at 4399.260 kb on + strand, within CA264_18955at 4399.343 kb on + strand, within CA264_18955at 4399.399 kb on - strand, within CA264_18955at 4399.415 kb on + strand, within CA264_18955at 4399.433 kb on + strand, within CA264_18955at 4399.433 kb on + strand, within CA264_18955at 4399.433 kb on + strand, within CA264_18955at 4399.433 kb on + strand, within CA264_18955at 4399.433 kb on + strand, within CA264_18955at 4399.433 kb on + strand, within CA264_18955at 4399.525 kb on - strandat 4399.525 kb on - strandat 4399.620 kb on + strandat 4399.703 kb on + strand, within CA264_18960at 4399.769 kb on - strand, within CA264_18960at 4399.811 kb on - strand, within CA264_18960at 4399.911 kb on - strand, within CA264_18960at 4400.029 kb on - strand, within CA264_18960at 4400.046 kb on - strand, within CA264_18960at 4400.101 kb on - strand, within CA264_18960at 4400.101 kb on - strand, within CA264_18960at 4400.118 kb on + strand, within CA264_18960at 4400.118 kb on + strand, within CA264_18960at 4400.118 kb on + strand, within CA264_18960at 4400.283 kb on + strand, within CA264_18960at 4400.337 kb on + strand, within CA264_18960at 4400.337 kb on + strand, within CA264_18960at 4400.337 kb on + strand, within CA264_18960at 4400.338 kb on - strand, within CA264_18960at 4400.409 kb on + strand, within CA264_18960at 4400.410 kb on - strand, within CA264_18960at 4400.415 kb on + strand, within CA264_18960at 4400.415 kb on + strand, within CA264_18960at 4400.415 kb on + strand, within CA264_18960at 4400.415 kb on + strand, within CA264_18960at 4400.415 kb on + strand, within CA264_18960at 4400.416 kb on - strand, within CA264_18960at 4400.416 kb on - strand, within CA264_18960at 4400.416 kb on - strand, within CA264_18960

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Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
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4,398,253 + +0.2
4,398,254 - +0.3
4,398,258 + +0.1
4,398,258 + -2.1
4,398,258 + +0.6
4,398,258 + +0.5
4,398,259 - +0.7
4,398,259 - -0.2
4,398,292 + +0.9
4,398,292 + -0.3
4,398,292 + +1.5
4,398,292 + -0.6
4,398,292 + -0.8
4,398,293 - -0.2
4,398,293 - +0.0
4,398,293 - -0.0
4,398,293 - -0.5
4,398,296 + +0.3
4,398,296 + -0.5
4,398,296 + +1.9
4,398,296 + +0.4
4,398,296 + -0.2
4,398,297 - -0.1
4,398,297 - -0.4
4,398,297 - -0.1
4,398,297 - -0.6
4,398,297 - +0.9
4,398,297 - -0.5
4,398,297 - -0.6
4,398,300 + -0.3
4,398,300 + +0.4
4,398,301 - +0.9
4,398,301 - -0.2
4,398,302 + -0.1
4,398,302 + -1.1
4,398,303 - -0.3
4,398,319 + +0.8
4,398,417 - -0.8
4,398,417 - +1.5
4,398,431 + -0.5
4,398,431 + +0.1
4,398,432 - +0.1
4,398,432 - +3.1
4,398,434 - -0.3
4,398,435 + +0.3
4,398,462 + -0.3
4,398,486 + +0.7
4,398,530 + -0.1
4,398,530 + +0.1
4,398,563 + +1.7
4,398,605 + -0.6
4,398,608 + CA264_18950 0.11 -0.3
4,398,615 + CA264_18950 0.12 +0.7
4,398,616 - CA264_18950 0.13 -0.0
4,398,781 + CA264_18950 0.56 +0.7
4,398,781 + CA264_18950 0.56 +0.5
4,398,782 - CA264_18950 0.57 +0.2
4,398,809 - CA264_18950 0.64 -0.2
4,398,849 - CA264_18950 0.74 -0.1
4,398,852 - CA264_18950 0.75 +0.4
4,398,853 + CA264_18950 0.75 +0.7
4,398,854 - CA264_18950 0.76 +0.9
4,398,959 - -0.6
4,398,960 + -0.1
4,398,960 + -0.3
4,398,961 - -0.5
4,398,961 - -0.1
4,398,961 - -0.4
4,398,963 + +1.5
4,398,964 - -1.9
4,399,045 + -0.2
4,399,074 + +0.9
4,399,092 - -0.1
4,399,130 + +0.9
4,399,135 - -1.1
4,399,158 - -0.2
4,399,165 + +0.5
4,399,197 - +0.5
4,399,202 - CA264_18955 0.11 -0.4
4,399,202 - CA264_18955 0.11 +0.9
4,399,210 - CA264_18955 0.13 -0.4
4,399,260 + CA264_18955 0.27 -0.2
4,399,343 + CA264_18955 0.51 +0.4
4,399,399 - CA264_18955 0.66 -0.5
4,399,415 + CA264_18955 0.71 -1.5
4,399,433 + CA264_18955 0.76 +0.3
4,399,433 + CA264_18955 0.76 +1.9
4,399,433 + CA264_18955 0.76 +0.3
4,399,433 + CA264_18955 0.76 +0.4
4,399,433 + CA264_18955 0.76 -0.6
4,399,433 + CA264_18955 0.76 -0.3
4,399,525 - -1.3
4,399,525 - +0.9
4,399,620 + +0.2
4,399,703 + CA264_18960 0.12 +1.2
4,399,769 - CA264_18960 0.17 -0.1
4,399,811 - CA264_18960 0.20 +0.9
4,399,911 - CA264_18960 0.27 +0.4
4,400,029 - CA264_18960 0.35 -0.6
4,400,046 - CA264_18960 0.36 -0.3
4,400,101 - CA264_18960 0.40 -1.5
4,400,101 - CA264_18960 0.40 -0.2
4,400,118 + CA264_18960 0.41 -0.1
4,400,118 + CA264_18960 0.41 +1.2
4,400,118 + CA264_18960 0.41 -0.6
4,400,283 + CA264_18960 0.52 -0.9
4,400,337 + CA264_18960 0.56 +0.4
4,400,337 + CA264_18960 0.56 -0.0
4,400,337 + CA264_18960 0.56 -0.1
4,400,338 - CA264_18960 0.56 -0.3
4,400,409 + CA264_18960 0.61 -0.6
4,400,410 - CA264_18960 0.61 -0.0
4,400,415 + CA264_18960 0.61 -1.1
4,400,415 + CA264_18960 0.61 -1.9
4,400,415 + CA264_18960 0.61 -0.1
4,400,415 + CA264_18960 0.61 -1.0
4,400,415 + CA264_18960 0.61 -0.2
4,400,416 - CA264_18960 0.61 -0.0
4,400,416 - CA264_18960 0.61 +0.3
4,400,416 - CA264_18960 0.61 -0.8

Or see this region's nucleotide sequence