Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18840 and CA264_18845 are separated by 39 nucleotides CA264_18845 and CA264_18850 are separated by 305 nucleotides
CA264_18840: CA264_18840 - AraC family transcriptional regulator, at 4,372,332 to 4,373,198
_18840
CA264_18845: CA264_18845 - alpha/beta hydrolase, at 4,373,238 to 4,374,005
_18845
CA264_18850: CA264_18850 - 1-deoxy-D-xylulose-5-phosphate synthase, at 4,374,311 to 4,376,227
_18850
Position (kb)
4373
4374
4375 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4372.238 kb on - strand at 4372.275 kb on - strand at 4372.309 kb on + strand at 4372.407 kb on + strand at 4372.408 kb on - strand at 4372.408 kb on - strand at 4372.455 kb on - strand, within CA264_18840 at 4372.476 kb on + strand, within CA264_18840 at 4372.605 kb on - strand, within CA264_18840 at 4372.606 kb on + strand, within CA264_18840 at 4372.607 kb on - strand, within CA264_18840 at 4372.616 kb on - strand, within CA264_18840 at 4372.616 kb on - strand, within CA264_18840 at 4372.688 kb on + strand, within CA264_18840 at 4372.820 kb on - strand, within CA264_18840 at 4372.820 kb on - strand, within CA264_18840 at 4372.820 kb on - strand, within CA264_18840 at 4372.935 kb on - strand, within CA264_18840 at 4372.945 kb on + strand, within CA264_18840 at 4372.945 kb on + strand, within CA264_18840 at 4373.007 kb on - strand, within CA264_18840 at 4373.183 kb on + strand at 4373.183 kb on + strand at 4373.220 kb on - strand at 4373.240 kb on - strand at 4373.247 kb on + strand at 4373.248 kb on - strand at 4373.287 kb on + strand at 4373.430 kb on + strand, within CA264_18845 at 4373.517 kb on + strand, within CA264_18845 at 4373.517 kb on + strand, within CA264_18845 at 4373.518 kb on - strand, within CA264_18845 at 4373.584 kb on - strand, within CA264_18845 at 4373.604 kb on - strand, within CA264_18845 at 4373.626 kb on + strand, within CA264_18845 at 4373.639 kb on + strand, within CA264_18845 at 4373.682 kb on - strand, within CA264_18845 at 4373.742 kb on + strand, within CA264_18845 at 4373.742 kb on + strand, within CA264_18845 at 4373.742 kb on + strand, within CA264_18845 at 4373.742 kb on + strand, within CA264_18845 at 4373.742 kb on + strand, within CA264_18845 at 4373.742 kb on + strand, within CA264_18845 at 4373.742 kb on + strand, within CA264_18845 at 4373.742 kb on + strand, within CA264_18845 at 4373.743 kb on - strand, within CA264_18845 at 4373.743 kb on - strand, within CA264_18845 at 4373.743 kb on - strand, within CA264_18845 at 4373.743 kb on - strand, within CA264_18845 at 4373.743 kb on - strand, within CA264_18845 at 4373.766 kb on + strand, within CA264_18845 at 4373.767 kb on - strand, within CA264_18845 at 4373.772 kb on + strand, within CA264_18845 at 4373.773 kb on - strand, within CA264_18845 at 4373.774 kb on + strand, within CA264_18845 at 4373.774 kb on + strand, within CA264_18845 at 4373.816 kb on - strand, within CA264_18845 at 4373.840 kb on - strand, within CA264_18845 at 4373.921 kb on + strand, within CA264_18845 at 4373.973 kb on + strand at 4373.974 kb on - strand at 4374.016 kb on + strand at 4374.016 kb on + strand at 4374.017 kb on - strand at 4374.062 kb on + strand at 4374.095 kb on - strand at 4374.105 kb on - strand at 4374.192 kb on + strand at 4374.192 kb on + strand at 4374.200 kb on + strand at 4374.200 kb on + strand at 4374.201 kb on - strand at 4374.259 kb on + strand at 4374.260 kb on - strand at 4374.261 kb on + strand at 4374.265 kb on - strand at 4374.280 kb on + strand at 4374.284 kb on + strand at 4374.295 kb on - strand at 4374.295 kb on - strand at 4374.295 kb on - strand at 4374.298 kb on + strand at 4374.299 kb on - strand at 4374.299 kb on - strand at 4374.306 kb on - strand at 4374.309 kb on - strand at 4374.309 kb on - strand at 4374.309 kb on - strand at 4374.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 4,372,238 - -0.1 4,372,275 - -1.5 4,372,309 + +0.1 4,372,407 + -0.2 4,372,408 - +0.1 4,372,408 - +0.5 4,372,455 - CA264_18840 0.14 -0.3 4,372,476 + CA264_18840 0.17 -0.1 4,372,605 - CA264_18840 0.31 +0.7 4,372,606 + CA264_18840 0.32 -0.4 4,372,607 - CA264_18840 0.32 +0.2 4,372,616 - CA264_18840 0.33 -0.1 4,372,616 - CA264_18840 0.33 -0.7 4,372,688 + CA264_18840 0.41 -0.6 4,372,820 - CA264_18840 0.56 -0.7 4,372,820 - CA264_18840 0.56 -0.7 4,372,820 - CA264_18840 0.56 -0.7 4,372,935 - CA264_18840 0.70 -0.5 4,372,945 + CA264_18840 0.71 +0.9 4,372,945 + CA264_18840 0.71 +1.1 4,373,007 - CA264_18840 0.78 -0.7 4,373,183 + +0.3 4,373,183 + -0.2 4,373,220 - -0.2 4,373,240 - -0.1 4,373,247 + +0.2 4,373,248 - -1.3 4,373,287 + +0.3 4,373,430 + CA264_18845 0.25 -0.7 4,373,517 + CA264_18845 0.36 -0.1 4,373,517 + CA264_18845 0.36 +1.5 4,373,518 - CA264_18845 0.36 -0.5 4,373,584 - CA264_18845 0.45 -0.9 4,373,604 - CA264_18845 0.48 -0.4 4,373,626 + CA264_18845 0.51 -1.2 4,373,639 + CA264_18845 0.52 -0.1 4,373,682 - CA264_18845 0.58 +0.0 4,373,742 + CA264_18845 0.66 +0.3 4,373,742 + CA264_18845 0.66 +0.1 4,373,742 + CA264_18845 0.66 -0.7 4,373,742 + CA264_18845 0.66 +1.9 4,373,742 + CA264_18845 0.66 -0.3 4,373,742 + CA264_18845 0.66 -0.6 4,373,742 + CA264_18845 0.66 -1.0 4,373,742 + CA264_18845 0.66 -0.7 4,373,743 - CA264_18845 0.66 -0.2 4,373,743 - CA264_18845 0.66 +0.3 4,373,743 - CA264_18845 0.66 +1.3 4,373,743 - CA264_18845 0.66 -0.7 4,373,743 - CA264_18845 0.66 -1.4 4,373,766 + CA264_18845 0.69 -0.4 4,373,767 - CA264_18845 0.69 +0.9 4,373,772 + CA264_18845 0.70 +0.1 4,373,773 - CA264_18845 0.70 -0.5 4,373,774 + CA264_18845 0.70 +0.1 4,373,774 + CA264_18845 0.70 -0.3 4,373,816 - CA264_18845 0.75 -2.1 4,373,840 - CA264_18845 0.78 -0.4 4,373,921 + CA264_18845 0.89 +0.7 4,373,973 + -0.4 4,373,974 - -0.2 4,374,016 + -0.4 4,374,016 + -0.3 4,374,017 - -0.6 4,374,062 + +1.5 4,374,095 - +1.7 4,374,105 - +0.9 4,374,192 + -1.7 4,374,192 + -1.7 4,374,200 + -0.1 4,374,200 + -0.4 4,374,201 - +0.9 4,374,259 + +2.2 4,374,260 - -0.5 4,374,261 + +0.9 4,374,265 - -0.3 4,374,280 + -1.4 4,374,284 + +1.4 4,374,295 - -0.1 4,374,295 - -1.5 4,374,295 - -0.5 4,374,298 + +2.9 4,374,299 - -0.7 4,374,299 - -0.8 4,374,306 - -0.4 4,374,309 - -0.1 4,374,309 - +0.9 4,374,309 - -0.6 4,374,315 - -0.7
Or see this region's nucleotide sequence