Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18845

Experiment: Ponti_ML7_MIT diversity barseq

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_18840 and CA264_18845 are separated by 39 nucleotidesCA264_18845 and CA264_18850 are separated by 305 nucleotides CA264_18840: CA264_18840 - AraC family transcriptional regulator, at 4,372,332 to 4,373,198 _18840 CA264_18845: CA264_18845 - alpha/beta hydrolase, at 4,373,238 to 4,374,005 _18845 CA264_18850: CA264_18850 - 1-deoxy-D-xylulose-5-phosphate synthase, at 4,374,311 to 4,376,227 _18850 Position (kb) 4373 4374 4375Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4372.238 kb on - strandat 4372.275 kb on - strandat 4372.309 kb on + strandat 4372.407 kb on + strandat 4372.408 kb on - strandat 4372.408 kb on - strandat 4372.455 kb on - strand, within CA264_18840at 4372.476 kb on + strand, within CA264_18840at 4372.605 kb on - strand, within CA264_18840at 4372.606 kb on + strand, within CA264_18840at 4372.607 kb on - strand, within CA264_18840at 4372.616 kb on - strand, within CA264_18840at 4372.616 kb on - strand, within CA264_18840at 4372.688 kb on + strand, within CA264_18840at 4372.820 kb on - strand, within CA264_18840at 4372.820 kb on - strand, within CA264_18840at 4372.820 kb on - strand, within CA264_18840at 4372.935 kb on - strand, within CA264_18840at 4372.945 kb on + strand, within CA264_18840at 4372.945 kb on + strand, within CA264_18840at 4373.007 kb on - strand, within CA264_18840at 4373.183 kb on + strandat 4373.183 kb on + strandat 4373.220 kb on - strandat 4373.240 kb on - strandat 4373.247 kb on + strandat 4373.248 kb on - strandat 4373.287 kb on + strandat 4373.430 kb on + strand, within CA264_18845at 4373.517 kb on + strand, within CA264_18845at 4373.517 kb on + strand, within CA264_18845at 4373.518 kb on - strand, within CA264_18845at 4373.584 kb on - strand, within CA264_18845at 4373.604 kb on - strand, within CA264_18845at 4373.626 kb on + strand, within CA264_18845at 4373.639 kb on + strand, within CA264_18845at 4373.682 kb on - strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.743 kb on - strand, within CA264_18845at 4373.743 kb on - strand, within CA264_18845at 4373.743 kb on - strand, within CA264_18845at 4373.743 kb on - strand, within CA264_18845at 4373.743 kb on - strand, within CA264_18845at 4373.766 kb on + strand, within CA264_18845at 4373.767 kb on - strand, within CA264_18845at 4373.772 kb on + strand, within CA264_18845at 4373.773 kb on - strand, within CA264_18845at 4373.774 kb on + strand, within CA264_18845at 4373.774 kb on + strand, within CA264_18845at 4373.816 kb on - strand, within CA264_18845at 4373.840 kb on - strand, within CA264_18845at 4373.921 kb on + strand, within CA264_18845at 4373.973 kb on + strandat 4373.974 kb on - strandat 4374.016 kb on + strandat 4374.016 kb on + strandat 4374.017 kb on - strandat 4374.062 kb on + strandat 4374.095 kb on - strandat 4374.105 kb on - strandat 4374.192 kb on + strandat 4374.192 kb on + strandat 4374.200 kb on + strandat 4374.200 kb on + strandat 4374.201 kb on - strandat 4374.259 kb on + strandat 4374.260 kb on - strandat 4374.261 kb on + strandat 4374.265 kb on - strandat 4374.280 kb on + strandat 4374.284 kb on + strandat 4374.295 kb on - strandat 4374.295 kb on - strandat 4374.295 kb on - strandat 4374.298 kb on + strandat 4374.299 kb on - strandat 4374.299 kb on - strandat 4374.306 kb on - strandat 4374.309 kb on - strandat 4374.309 kb on - strandat 4374.309 kb on - strandat 4374.315 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
remove
4,372,238 - -0.1
4,372,275 - -1.5
4,372,309 + +0.1
4,372,407 + -0.2
4,372,408 - +0.1
4,372,408 - +0.5
4,372,455 - CA264_18840 0.14 -0.3
4,372,476 + CA264_18840 0.17 -0.1
4,372,605 - CA264_18840 0.31 +0.7
4,372,606 + CA264_18840 0.32 -0.4
4,372,607 - CA264_18840 0.32 +0.2
4,372,616 - CA264_18840 0.33 -0.1
4,372,616 - CA264_18840 0.33 -0.7
4,372,688 + CA264_18840 0.41 -0.6
4,372,820 - CA264_18840 0.56 -0.7
4,372,820 - CA264_18840 0.56 -0.7
4,372,820 - CA264_18840 0.56 -0.7
4,372,935 - CA264_18840 0.70 -0.5
4,372,945 + CA264_18840 0.71 +0.9
4,372,945 + CA264_18840 0.71 +1.1
4,373,007 - CA264_18840 0.78 -0.7
4,373,183 + +0.3
4,373,183 + -0.2
4,373,220 - -0.2
4,373,240 - -0.1
4,373,247 + +0.2
4,373,248 - -1.3
4,373,287 + +0.3
4,373,430 + CA264_18845 0.25 -0.7
4,373,517 + CA264_18845 0.36 -0.1
4,373,517 + CA264_18845 0.36 +1.5
4,373,518 - CA264_18845 0.36 -0.5
4,373,584 - CA264_18845 0.45 -0.9
4,373,604 - CA264_18845 0.48 -0.4
4,373,626 + CA264_18845 0.51 -1.2
4,373,639 + CA264_18845 0.52 -0.1
4,373,682 - CA264_18845 0.58 +0.0
4,373,742 + CA264_18845 0.66 +0.3
4,373,742 + CA264_18845 0.66 +0.1
4,373,742 + CA264_18845 0.66 -0.7
4,373,742 + CA264_18845 0.66 +1.9
4,373,742 + CA264_18845 0.66 -0.3
4,373,742 + CA264_18845 0.66 -0.6
4,373,742 + CA264_18845 0.66 -1.0
4,373,742 + CA264_18845 0.66 -0.7
4,373,743 - CA264_18845 0.66 -0.2
4,373,743 - CA264_18845 0.66 +0.3
4,373,743 - CA264_18845 0.66 +1.3
4,373,743 - CA264_18845 0.66 -0.7
4,373,743 - CA264_18845 0.66 -1.4
4,373,766 + CA264_18845 0.69 -0.4
4,373,767 - CA264_18845 0.69 +0.9
4,373,772 + CA264_18845 0.70 +0.1
4,373,773 - CA264_18845 0.70 -0.5
4,373,774 + CA264_18845 0.70 +0.1
4,373,774 + CA264_18845 0.70 -0.3
4,373,816 - CA264_18845 0.75 -2.1
4,373,840 - CA264_18845 0.78 -0.4
4,373,921 + CA264_18845 0.89 +0.7
4,373,973 + -0.4
4,373,974 - -0.2
4,374,016 + -0.4
4,374,016 + -0.3
4,374,017 - -0.6
4,374,062 + +1.5
4,374,095 - +1.7
4,374,105 - +0.9
4,374,192 + -1.7
4,374,192 + -1.7
4,374,200 + -0.1
4,374,200 + -0.4
4,374,201 - +0.9
4,374,259 + +2.2
4,374,260 - -0.5
4,374,261 + +0.9
4,374,265 - -0.3
4,374,280 + -1.4
4,374,284 + +1.4
4,374,295 - -0.1
4,374,295 - -1.5
4,374,295 - -0.5
4,374,298 + +2.9
4,374,299 - -0.7
4,374,299 - -0.8
4,374,306 - -0.4
4,374,309 - -0.1
4,374,309 - +0.9
4,374,309 - -0.6
4,374,315 - -0.7

Or see this region's nucleotide sequence