Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17880 and CA264_17885 are separated by 251 nucleotides CA264_17885 and CA264_17890 are separated by 68 nucleotides CA264_17890 and CA264_17895 are separated by 148 nucleotides
CA264_17880: CA264_17880 - phosphatidylserine decarboxylase, at 4,157,596 to 4,158,279
_17880
CA264_17885: CA264_17885 - GAF domain-containing protein, at 4,158,531 to 4,159,013
_17885
CA264_17890: CA264_17890 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase, at 4,159,082 to 4,160,119
_17890
CA264_17895: CA264_17895 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 4,160,268 to 4,161,122
_17895
Position (kb)
4159
4160
4161 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4158.277 kb on + strand at 4158.293 kb on - strand at 4158.293 kb on - strand at 4158.294 kb on + strand at 4158.294 kb on + strand at 4158.295 kb on - strand at 4158.300 kb on - strand at 4158.303 kb on + strand at 4158.303 kb on + strand at 4158.303 kb on + strand at 4158.304 kb on - strand at 4158.402 kb on - strand at 4158.499 kb on + strand at 4158.517 kb on - strand at 4158.520 kb on + strand at 4158.615 kb on + strand, within CA264_17885 at 4158.633 kb on + strand, within CA264_17885 at 4158.746 kb on + strand, within CA264_17885 at 4158.965 kb on - strand at 4158.993 kb on + strand at 4158.993 kb on + strand at 4158.994 kb on - strand at 4159.018 kb on + strand at 4159.019 kb on - strand at 4159.021 kb on + strand at 4159.051 kb on + strand at 4159.056 kb on - strand at 4159.056 kb on - strand at 4159.090 kb on + strand at 4159.091 kb on - strand at 4159.091 kb on - strand at 4159.093 kb on + strand at 4159.093 kb on + strand at 4159.094 kb on - strand at 4159.094 kb on - strand at 4160.120 kb on - strand at 4160.145 kb on + strand at 4160.145 kb on + strand at 4160.213 kb on + strand at 4160.216 kb on + strand at 4160.224 kb on + strand at 4160.224 kb on + strand at 4160.844 kb on + strand, within CA264_17895
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 4,158,277 + +0.3 4,158,293 - +2.9 4,158,293 - +1.4 4,158,294 + -0.2 4,158,294 + -0.1 4,158,295 - +1.9 4,158,300 - -1.4 4,158,303 + +0.2 4,158,303 + -0.7 4,158,303 + +0.1 4,158,304 - +0.4 4,158,402 - -1.1 4,158,499 + +0.3 4,158,517 - -0.3 4,158,520 + -0.2 4,158,615 + CA264_17885 0.17 -0.1 4,158,633 + CA264_17885 0.21 +1.2 4,158,746 + CA264_17885 0.45 +0.5 4,158,965 - +1.0 4,158,993 + -0.4 4,158,993 + -0.2 4,158,994 - -0.5 4,159,018 + +0.1 4,159,019 - -0.1 4,159,021 + -1.0 4,159,051 + +0.4 4,159,056 - -0.5 4,159,056 - -1.4 4,159,090 + -0.7 4,159,091 - -0.1 4,159,091 - +0.9 4,159,093 + +0.3 4,159,093 + +0.0 4,159,094 - -0.0 4,159,094 - -0.1 4,160,120 - -0.6 4,160,145 + -0.3 4,160,145 + -0.5 4,160,213 + +2.2 4,160,216 + +0.9 4,160,224 + +0.1 4,160,224 + +1.3 4,160,844 + CA264_17895 0.67 +0.9
Or see this region's nucleotide sequence