Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16580

Experiment: Ponti_ML7_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16575 and CA264_16580 are separated by 154 nucleotidesCA264_16580 and CA264_16585 are separated by 424 nucleotidesCA264_16585 and CA264_16590 are separated by 194 nucleotides CA264_16575: CA264_16575 - hypothetical protein, at 3,853,885 to 3,854,283 _16575 CA264_16580: CA264_16580 - aminoacyl-tRNA hydrolase, at 3,854,438 to 3,854,848 _16580 CA264_16585: CA264_16585 - hypothetical protein, at 3,855,273 to 3,855,653 _16585 CA264_16590: CA264_16590 - site-2 protease family protein, at 3,855,848 to 3,856,927 _16590 Position (kb) 3854 3855Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3853.490 kb on + strandat 3853.490 kb on + strandat 3853.491 kb on - strandat 3853.496 kb on - strandat 3853.565 kb on + strandat 3853.565 kb on + strandat 3853.566 kb on - strandat 3853.640 kb on - strandat 3853.653 kb on + strandat 3853.653 kb on + strandat 3853.653 kb on + strandat 3853.654 kb on - strandat 3853.779 kb on + strandat 3853.848 kb on + strandat 3853.918 kb on + strandat 3853.982 kb on - strand, within CA264_16575at 3853.982 kb on - strand, within CA264_16575at 3854.000 kb on + strand, within CA264_16575at 3854.000 kb on + strand, within CA264_16575at 3854.031 kb on + strand, within CA264_16575at 3854.158 kb on + strand, within CA264_16575at 3854.232 kb on - strand, within CA264_16575at 3854.297 kb on - strandat 3854.325 kb on - strandat 3854.336 kb on + strandat 3854.338 kb on + strandat 3854.339 kb on - strandat 3854.339 kb on - strandat 3854.374 kb on - strandat 3854.374 kb on - strandat 3854.374 kb on - strandat 3854.374 kb on - strandat 3854.574 kb on - strand, within CA264_16580at 3854.755 kb on + strand, within CA264_16580at 3854.755 kb on + strand, within CA264_16580at 3854.755 kb on + strand, within CA264_16580at 3854.755 kb on + strand, within CA264_16580at 3854.756 kb on - strand, within CA264_16580at 3854.849 kb on - strandat 3854.851 kb on - strandat 3854.851 kb on - strandat 3854.860 kb on + strandat 3854.862 kb on + strandat 3854.863 kb on - strandat 3854.912 kb on - strandat 3854.934 kb on + strandat 3854.936 kb on + strandat 3854.936 kb on + strandat 3854.936 kb on + strandat 3854.937 kb on - strandat 3854.998 kb on + strandat 3854.999 kb on - strandat 3855.037 kb on + strandat 3855.038 kb on - strandat 3855.049 kb on + strandat 3855.050 kb on - strandat 3855.106 kb on - strandat 3855.164 kb on - strandat 3855.164 kb on - strandat 3855.213 kb on - strandat 3855.215 kb on + strandat 3855.216 kb on - strandat 3855.217 kb on + strandat 3855.218 kb on - strandat 3855.218 kb on - strandat 3855.229 kb on + strandat 3855.254 kb on + strandat 3855.254 kb on + strandat 3855.254 kb on + strandat 3855.254 kb on + strandat 3855.255 kb on - strandat 3855.255 kb on - strandat 3855.255 kb on - strandat 3855.356 kb on + strand, within CA264_16585at 3855.377 kb on + strand, within CA264_16585at 3855.682 kb on - strandat 3855.759 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
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3,853,490 + -0.5
3,853,490 + -1.4
3,853,491 - +1.7
3,853,496 - +0.4
3,853,565 + -0.2
3,853,565 + +0.8
3,853,566 - -0.7
3,853,640 - -0.2
3,853,653 + +0.4
3,853,653 + -1.1
3,853,653 + -0.6
3,853,654 - +2.9
3,853,779 + -0.4
3,853,848 + -0.8
3,853,918 + +0.5
3,853,982 - CA264_16575 0.24 +0.2
3,853,982 - CA264_16575 0.24 +1.3
3,854,000 + CA264_16575 0.29 +0.1
3,854,000 + CA264_16575 0.29 -0.2
3,854,031 + CA264_16575 0.37 -1.3
3,854,158 + CA264_16575 0.68 +0.0
3,854,232 - CA264_16575 0.87 +0.4
3,854,297 - -0.2
3,854,325 - -1.4
3,854,336 + -1.4
3,854,338 + -0.7
3,854,339 - +0.5
3,854,339 - -0.1
3,854,374 - -0.1
3,854,374 - +1.3
3,854,374 - -0.6
3,854,374 - +0.0
3,854,574 - CA264_16580 0.33 +0.7
3,854,755 + CA264_16580 0.77 -0.9
3,854,755 + CA264_16580 0.77 -0.1
3,854,755 + CA264_16580 0.77 -0.4
3,854,755 + CA264_16580 0.77 -0.8
3,854,756 - CA264_16580 0.77 -1.4
3,854,849 - -0.6
3,854,851 - +0.3
3,854,851 - -0.1
3,854,860 + -0.2
3,854,862 + -1.4
3,854,863 - -0.7
3,854,912 - -0.3
3,854,934 + +0.6
3,854,936 + +0.2
3,854,936 + +0.1
3,854,936 + +0.9
3,854,937 - +0.8
3,854,998 + +1.9
3,854,999 - -0.6
3,855,037 + +0.9
3,855,038 - +1.7
3,855,049 + +0.9
3,855,050 - -0.5
3,855,106 - -0.0
3,855,164 - -0.1
3,855,164 - -0.3
3,855,213 - +0.9
3,855,215 + -0.1
3,855,216 - -0.3
3,855,217 + -2.1
3,855,218 - -0.0
3,855,218 - +0.5
3,855,229 + +0.7
3,855,254 + +1.9
3,855,254 + -0.0
3,855,254 + +1.5
3,855,254 + +0.7
3,855,255 - -0.3
3,855,255 - -0.8
3,855,255 - +0.9
3,855,356 + CA264_16585 0.22 -0.6
3,855,377 + CA264_16585 0.27 -0.5
3,855,682 - +0.3
3,855,759 + -0.0

Or see this region's nucleotide sequence