Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16575 and CA264_16580 are separated by 154 nucleotides CA264_16580 and CA264_16585 are separated by 424 nucleotides CA264_16585 and CA264_16590 are separated by 194 nucleotides
CA264_16575: CA264_16575 - hypothetical protein, at 3,853,885 to 3,854,283
_16575
CA264_16580: CA264_16580 - aminoacyl-tRNA hydrolase, at 3,854,438 to 3,854,848
_16580
CA264_16585: CA264_16585 - hypothetical protein, at 3,855,273 to 3,855,653
_16585
CA264_16590: CA264_16590 - site-2 protease family protein, at 3,855,848 to 3,856,927
_16590
Position (kb)
3854
3855 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3853.490 kb on + strand at 3853.490 kb on + strand at 3853.491 kb on - strand at 3853.496 kb on - strand at 3853.565 kb on + strand at 3853.565 kb on + strand at 3853.566 kb on - strand at 3853.640 kb on - strand at 3853.653 kb on + strand at 3853.653 kb on + strand at 3853.653 kb on + strand at 3853.654 kb on - strand at 3853.779 kb on + strand at 3853.848 kb on + strand at 3853.918 kb on + strand at 3853.982 kb on - strand, within CA264_16575 at 3853.982 kb on - strand, within CA264_16575 at 3854.000 kb on + strand, within CA264_16575 at 3854.000 kb on + strand, within CA264_16575 at 3854.031 kb on + strand, within CA264_16575 at 3854.158 kb on + strand, within CA264_16575 at 3854.232 kb on - strand, within CA264_16575 at 3854.297 kb on - strand at 3854.325 kb on - strand at 3854.336 kb on + strand at 3854.338 kb on + strand at 3854.339 kb on - strand at 3854.339 kb on - strand at 3854.374 kb on - strand at 3854.374 kb on - strand at 3854.374 kb on - strand at 3854.374 kb on - strand at 3854.574 kb on - strand, within CA264_16580 at 3854.755 kb on + strand, within CA264_16580 at 3854.755 kb on + strand, within CA264_16580 at 3854.755 kb on + strand, within CA264_16580 at 3854.755 kb on + strand, within CA264_16580 at 3854.756 kb on - strand, within CA264_16580 at 3854.849 kb on - strand at 3854.851 kb on - strand at 3854.851 kb on - strand at 3854.860 kb on + strand at 3854.862 kb on + strand at 3854.863 kb on - strand at 3854.912 kb on - strand at 3854.934 kb on + strand at 3854.936 kb on + strand at 3854.936 kb on + strand at 3854.936 kb on + strand at 3854.937 kb on - strand at 3854.998 kb on + strand at 3854.999 kb on - strand at 3855.037 kb on + strand at 3855.038 kb on - strand at 3855.049 kb on + strand at 3855.050 kb on - strand at 3855.106 kb on - strand at 3855.164 kb on - strand at 3855.164 kb on - strand at 3855.213 kb on - strand at 3855.215 kb on + strand at 3855.216 kb on - strand at 3855.217 kb on + strand at 3855.218 kb on - strand at 3855.218 kb on - strand at 3855.229 kb on + strand at 3855.254 kb on + strand at 3855.254 kb on + strand at 3855.254 kb on + strand at 3855.254 kb on + strand at 3855.255 kb on - strand at 3855.255 kb on - strand at 3855.255 kb on - strand at 3855.356 kb on + strand, within CA264_16585 at 3855.377 kb on + strand, within CA264_16585 at 3855.682 kb on - strand at 3855.759 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 3,853,490 + -0.5 3,853,490 + -1.4 3,853,491 - +1.7 3,853,496 - +0.4 3,853,565 + -0.2 3,853,565 + +0.8 3,853,566 - -0.7 3,853,640 - -0.2 3,853,653 + +0.4 3,853,653 + -1.1 3,853,653 + -0.6 3,853,654 - +2.9 3,853,779 + -0.4 3,853,848 + -0.8 3,853,918 + +0.5 3,853,982 - CA264_16575 0.24 +0.2 3,853,982 - CA264_16575 0.24 +1.3 3,854,000 + CA264_16575 0.29 +0.1 3,854,000 + CA264_16575 0.29 -0.2 3,854,031 + CA264_16575 0.37 -1.3 3,854,158 + CA264_16575 0.68 +0.0 3,854,232 - CA264_16575 0.87 +0.4 3,854,297 - -0.2 3,854,325 - -1.4 3,854,336 + -1.4 3,854,338 + -0.7 3,854,339 - +0.5 3,854,339 - -0.1 3,854,374 - -0.1 3,854,374 - +1.3 3,854,374 - -0.6 3,854,374 - +0.0 3,854,574 - CA264_16580 0.33 +0.7 3,854,755 + CA264_16580 0.77 -0.9 3,854,755 + CA264_16580 0.77 -0.1 3,854,755 + CA264_16580 0.77 -0.4 3,854,755 + CA264_16580 0.77 -0.8 3,854,756 - CA264_16580 0.77 -1.4 3,854,849 - -0.6 3,854,851 - +0.3 3,854,851 - -0.1 3,854,860 + -0.2 3,854,862 + -1.4 3,854,863 - -0.7 3,854,912 - -0.3 3,854,934 + +0.6 3,854,936 + +0.2 3,854,936 + +0.1 3,854,936 + +0.9 3,854,937 - +0.8 3,854,998 + +1.9 3,854,999 - -0.6 3,855,037 + +0.9 3,855,038 - +1.7 3,855,049 + +0.9 3,855,050 - -0.5 3,855,106 - -0.0 3,855,164 - -0.1 3,855,164 - -0.3 3,855,213 - +0.9 3,855,215 + -0.1 3,855,216 - -0.3 3,855,217 + -2.1 3,855,218 - -0.0 3,855,218 - +0.5 3,855,229 + +0.7 3,855,254 + +1.9 3,855,254 + -0.0 3,855,254 + +1.5 3,855,254 + +0.7 3,855,255 - -0.3 3,855,255 - -0.8 3,855,255 - +0.9 3,855,356 + CA264_16585 0.22 -0.6 3,855,377 + CA264_16585 0.27 -0.5 3,855,682 - +0.3 3,855,759 + -0.0
Or see this region's nucleotide sequence