Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15220 and CA264_15225 are separated by 11 nucleotides CA264_15225 and CA264_15230 are separated by 65 nucleotides CA264_15230 and CA264_15235 are separated by 46 nucleotides
CA264_15220: CA264_15220 - outer membrane protein assembly factor BamA, at 3,564,730 to 3,567,228
_15220
CA264_15225: CA264_15225 - di-trans,poly-cis-decaprenylcistransferase, at 3,567,240 to 3,567,977
_15225
CA264_15230: CA264_15230 - hypothetical protein, at 3,568,043 to 3,568,810
_15230
CA264_15235: CA264_15235 - hypothetical protein, at 3,568,857 to 3,569,849
_15235
Position (kb)
3568
3569 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3567.239 kb on - strand at 3567.250 kb on - strand at 3567.267 kb on - strand at 3567.267 kb on - strand at 3567.948 kb on + strand at 3567.957 kb on + strand at 3568.044 kb on + strand at 3568.044 kb on + strand at 3568.045 kb on - strand at 3568.115 kb on + strand at 3568.131 kb on + strand, within CA264_15230 at 3568.161 kb on + strand, within CA264_15230 at 3568.186 kb on - strand, within CA264_15230 at 3568.186 kb on - strand, within CA264_15230 at 3568.306 kb on - strand, within CA264_15230 at 3568.350 kb on + strand, within CA264_15230 at 3568.350 kb on + strand, within CA264_15230 at 3568.350 kb on + strand, within CA264_15230 at 3568.367 kb on - strand, within CA264_15230 at 3568.413 kb on + strand, within CA264_15230 at 3568.413 kb on + strand, within CA264_15230 at 3568.414 kb on - strand, within CA264_15230 at 3568.416 kb on + strand, within CA264_15230 at 3568.417 kb on - strand, within CA264_15230 at 3568.485 kb on + strand, within CA264_15230 at 3568.489 kb on + strand, within CA264_15230 at 3568.613 kb on + strand, within CA264_15230 at 3568.627 kb on + strand, within CA264_15230 at 3568.679 kb on + strand, within CA264_15230 at 3568.680 kb on - strand, within CA264_15230 at 3568.692 kb on - strand, within CA264_15230 at 3568.757 kb on + strand at 3568.777 kb on + strand at 3568.812 kb on + strand at 3568.812 kb on + strand at 3568.828 kb on - strand at 3568.855 kb on + strand at 3568.856 kb on - strand at 3568.862 kb on + strand at 3568.895 kb on + strand at 3568.924 kb on + strand at 3568.925 kb on - strand at 3568.925 kb on - strand at 3568.925 kb on - strand at 3568.973 kb on - strand at 3568.991 kb on - strand, within CA264_15235 at 3568.991 kb on - strand, within CA264_15235 at 3568.991 kb on - strand, within CA264_15235 at 3568.991 kb on - strand, within CA264_15235 at 3568.991 kb on - strand, within CA264_15235 at 3568.996 kb on - strand, within CA264_15235 at 3568.996 kb on - strand, within CA264_15235 at 3569.010 kb on - strand, within CA264_15235 at 3569.097 kb on + strand, within CA264_15235 at 3569.097 kb on + strand, within CA264_15235 at 3569.100 kb on - strand, within CA264_15235 at 3569.123 kb on + strand, within CA264_15235 at 3569.127 kb on + strand, within CA264_15235 at 3569.127 kb on + strand, within CA264_15235 at 3569.128 kb on - strand, within CA264_15235 at 3569.128 kb on - strand, within CA264_15235 at 3569.166 kb on + strand, within CA264_15235 at 3569.166 kb on + strand, within CA264_15235 at 3569.177 kb on + strand, within CA264_15235 at 3569.189 kb on - strand, within CA264_15235 at 3569.201 kb on + strand, within CA264_15235 at 3569.203 kb on + strand, within CA264_15235 at 3569.203 kb on + strand, within CA264_15235 at 3569.239 kb on - strand, within CA264_15235 at 3569.248 kb on + strand, within CA264_15235 at 3569.311 kb on + strand, within CA264_15235 at 3569.312 kb on - strand, within CA264_15235 at 3569.328 kb on - strand, within CA264_15235 at 3569.381 kb on + strand, within CA264_15235 at 3569.467 kb on - strand, within CA264_15235 at 3569.632 kb on + strand, within CA264_15235 at 3569.637 kb on - strand, within CA264_15235 at 3569.637 kb on - strand, within CA264_15235 at 3569.637 kb on - strand, within CA264_15235 at 3569.639 kb on - strand, within CA264_15235 at 3569.639 kb on - strand, within CA264_15235 at 3569.643 kb on - strand, within CA264_15235 at 3569.753 kb on - strand at 3569.789 kb on + strand at 3569.790 kb on - strand at 3569.790 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 3,567,239 - -1.1 3,567,250 - +0.6 3,567,267 - +0.8 3,567,267 - -0.0 3,567,948 + +0.2 3,567,957 + +0.1 3,568,044 + -1.7 3,568,044 + -0.1 3,568,045 - -0.4 3,568,115 + +1.6 3,568,131 + CA264_15230 0.11 +2.5 3,568,161 + CA264_15230 0.15 +0.7 3,568,186 - CA264_15230 0.19 -0.3 3,568,186 - CA264_15230 0.19 +2.5 3,568,306 - CA264_15230 0.34 +1.1 3,568,350 + CA264_15230 0.40 +1.1 3,568,350 + CA264_15230 0.40 +1.0 3,568,350 + CA264_15230 0.40 +0.9 3,568,367 - CA264_15230 0.42 +1.9 3,568,413 + CA264_15230 0.48 +0.6 3,568,413 + CA264_15230 0.48 +3.2 3,568,414 - CA264_15230 0.48 +0.9 3,568,416 + CA264_15230 0.49 +0.9 3,568,417 - CA264_15230 0.49 +1.1 3,568,485 + CA264_15230 0.58 +1.3 3,568,489 + CA264_15230 0.58 +0.5 3,568,613 + CA264_15230 0.74 +2.5 3,568,627 + CA264_15230 0.76 +1.8 3,568,679 + CA264_15230 0.83 +1.1 3,568,680 - CA264_15230 0.83 +2.9 3,568,692 - CA264_15230 0.85 +0.3 3,568,757 + +0.4 3,568,777 + +1.7 3,568,812 + +0.5 3,568,812 + -0.2 3,568,828 - -0.3 3,568,855 + +0.9 3,568,856 - -1.3 3,568,862 + +0.3 3,568,895 + -0.5 3,568,924 + -0.5 3,568,925 - +0.1 3,568,925 - -0.3 3,568,925 - +0.4 3,568,973 - -0.3 3,568,991 - CA264_15235 0.13 +0.5 3,568,991 - CA264_15235 0.13 -0.1 3,568,991 - CA264_15235 0.13 -1.0 3,568,991 - CA264_15235 0.13 -0.0 3,568,991 - CA264_15235 0.13 -0.1 3,568,996 - CA264_15235 0.14 -0.5 3,568,996 - CA264_15235 0.14 +0.3 3,569,010 - CA264_15235 0.15 +0.4 3,569,097 + CA264_15235 0.24 -0.1 3,569,097 + CA264_15235 0.24 -0.3 3,569,100 - CA264_15235 0.24 -0.7 3,569,123 + CA264_15235 0.27 +0.4 3,569,127 + CA264_15235 0.27 +0.4 3,569,127 + CA264_15235 0.27 -0.1 3,569,128 - CA264_15235 0.27 +0.2 3,569,128 - CA264_15235 0.27 +0.1 3,569,166 + CA264_15235 0.31 +0.4 3,569,166 + CA264_15235 0.31 +0.0 3,569,177 + CA264_15235 0.32 -0.5 3,569,189 - CA264_15235 0.33 +0.5 3,569,201 + CA264_15235 0.35 +0.7 3,569,203 + CA264_15235 0.35 +0.4 3,569,203 + CA264_15235 0.35 -0.6 3,569,239 - CA264_15235 0.38 +0.1 3,569,248 + CA264_15235 0.39 -1.1 3,569,311 + CA264_15235 0.46 -2.6 3,569,312 - CA264_15235 0.46 +0.9 3,569,328 - CA264_15235 0.47 +0.4 3,569,381 + CA264_15235 0.53 -0.1 3,569,467 - CA264_15235 0.61 +0.3 3,569,632 + CA264_15235 0.78 -0.9 3,569,637 - CA264_15235 0.79 -0.3 3,569,637 - CA264_15235 0.79 +0.3 3,569,637 - CA264_15235 0.79 -0.3 3,569,639 - CA264_15235 0.79 +0.4 3,569,639 - CA264_15235 0.79 +0.1 3,569,643 - CA264_15235 0.79 -0.1 3,569,753 - +0.2 3,569,789 + +0.3 3,569,790 - +0.8 3,569,790 - +0.6
Or see this region's nucleotide sequence