Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15170 and CA264_15175 are separated by 19 nucleotides CA264_15175 and CA264_15180 are separated by 3 nucleotides CA264_15180 and CA264_15185 are separated by 194 nucleotides
CA264_15170: CA264_15170 - biopolymer transporter ExbD, at 3,556,180 to 3,556,785
_15170
CA264_15175: CA264_15175 - biopolymer transporter ExbD, at 3,556,805 to 3,557,329
_15175
CA264_15180: CA264_15180 - energy transducer TonB, at 3,557,333 to 3,558,163
_15180
CA264_15185: CA264_15185 - hypothetical protein, at 3,558,358 to 3,559,194
_15185
Position (kb)
3557
3558
3559 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3556.380 kb on + strand, within CA264_15170 at 3556.427 kb on + strand, within CA264_15170 at 3556.597 kb on - strand, within CA264_15170 at 3556.626 kb on - strand, within CA264_15170 at 3556.783 kb on + strand at 3556.784 kb on - strand at 3556.804 kb on - strand at 3557.069 kb on + strand, within CA264_15175 at 3557.235 kb on + strand, within CA264_15175 at 3557.344 kb on + strand at 3557.408 kb on + strand at 3557.660 kb on - strand, within CA264_15180 at 3557.838 kb on + strand, within CA264_15180 at 3557.857 kb on + strand, within CA264_15180 at 3557.857 kb on + strand, within CA264_15180 at 3557.861 kb on + strand, within CA264_15180 at 3557.977 kb on - strand, within CA264_15180 at 3558.161 kb on + strand at 3558.247 kb on + strand at 3558.250 kb on + strand at 3558.251 kb on - strand at 3558.251 kb on - strand at 3558.255 kb on - strand at 3558.327 kb on + strand at 3558.373 kb on + strand at 3558.377 kb on + strand at 3558.452 kb on - strand, within CA264_15185 at 3558.462 kb on + strand, within CA264_15185 at 3558.493 kb on - strand, within CA264_15185 at 3558.556 kb on + strand, within CA264_15185 at 3558.571 kb on + strand, within CA264_15185 at 3558.571 kb on + strand, within CA264_15185 at 3558.571 kb on + strand, within CA264_15185 at 3558.571 kb on + strand, within CA264_15185 at 3558.572 kb on - strand, within CA264_15185 at 3558.572 kb on - strand, within CA264_15185 at 3558.590 kb on - strand, within CA264_15185 at 3558.606 kb on + strand, within CA264_15185 at 3558.892 kb on + strand, within CA264_15185 at 3558.892 kb on + strand, within CA264_15185 at 3558.892 kb on + strand, within CA264_15185 at 3558.893 kb on - strand, within CA264_15185
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 3,556,380 + CA264_15170 0.33 +1.7 3,556,427 + CA264_15170 0.41 +2.6 3,556,597 - CA264_15170 0.69 +5.4 3,556,626 - CA264_15170 0.74 +0.9 3,556,783 + -0.3 3,556,784 - +0.6 3,556,804 - +1.2 3,557,069 + CA264_15175 0.50 +3.2 3,557,235 + CA264_15175 0.82 +4.4 3,557,344 + +0.1 3,557,408 + -0.1 3,557,660 - CA264_15180 0.39 -0.1 3,557,838 + CA264_15180 0.61 -0.3 3,557,857 + CA264_15180 0.63 +0.1 3,557,857 + CA264_15180 0.63 -0.1 3,557,861 + CA264_15180 0.64 -0.3 3,557,977 - CA264_15180 0.77 +0.3 3,558,161 + +0.6 3,558,247 + +0.2 3,558,250 + -1.2 3,558,251 - -1.0 3,558,251 - +0.4 3,558,255 - -0.1 3,558,327 + +1.2 3,558,373 + -0.4 3,558,377 + -0.6 3,558,452 - CA264_15185 0.11 -2.5 3,558,462 + CA264_15185 0.12 +0.1 3,558,493 - CA264_15185 0.16 +0.0 3,558,556 + CA264_15185 0.24 -0.7 3,558,571 + CA264_15185 0.25 -0.6 3,558,571 + CA264_15185 0.25 -0.4 3,558,571 + CA264_15185 0.25 -0.3 3,558,571 + CA264_15185 0.25 +0.3 3,558,572 - CA264_15185 0.26 -0.2 3,558,572 - CA264_15185 0.26 -0.1 3,558,590 - CA264_15185 0.28 -0.2 3,558,606 + CA264_15185 0.30 -1.5 3,558,892 + CA264_15185 0.64 +1.5 3,558,892 + CA264_15185 0.64 -0.1 3,558,892 + CA264_15185 0.64 -0.4 3,558,893 - CA264_15185 0.64 +0.4
Or see this region's nucleotide sequence