Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15010 and CA264_15015 are separated by 62 nucleotides CA264_15015 and CA264_15020 are separated by 257 nucleotides
CA264_15010: CA264_15010 - gliding motility lipoprotein GldD, at 3,521,844 to 3,522,461
_15010
CA264_15015: CA264_15015 - hypothetical protein, at 3,522,524 to 3,522,931
_15015
CA264_15020: CA264_15020 - DNA helicase RecG, at 3,523,189 to 3,525,288
_15020
Position (kb)
3523
3524
3525
3526 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3522.316 kb on - strand, within CA264_15010 at 3522.356 kb on - strand, within CA264_15010 at 3522.456 kb on - strand at 3522.459 kb on + strand at 3522.460 kb on - strand at 3522.460 kb on - strand at 3522.509 kb on + strand at 3522.509 kb on + strand at 3522.554 kb on + strand at 3522.555 kb on - strand at 3522.569 kb on + strand, within CA264_15015 at 3522.630 kb on + strand, within CA264_15015 at 3522.630 kb on + strand, within CA264_15015 at 3522.631 kb on - strand, within CA264_15015 at 3522.653 kb on + strand, within CA264_15015 at 3522.657 kb on + strand, within CA264_15015 at 3522.657 kb on + strand, within CA264_15015 at 3522.657 kb on + strand, within CA264_15015 at 3522.657 kb on + strand, within CA264_15015 at 3522.658 kb on - strand, within CA264_15015 at 3522.658 kb on - strand, within CA264_15015 at 3522.661 kb on + strand, within CA264_15015 at 3522.662 kb on - strand, within CA264_15015 at 3522.664 kb on + strand, within CA264_15015 at 3522.665 kb on - strand, within CA264_15015 at 3522.689 kb on + strand, within CA264_15015 at 3522.690 kb on - strand, within CA264_15015 at 3522.713 kb on + strand, within CA264_15015 at 3522.737 kb on - strand, within CA264_15015 at 3522.744 kb on + strand, within CA264_15015 at 3522.745 kb on - strand, within CA264_15015 at 3522.747 kb on + strand, within CA264_15015 at 3522.748 kb on - strand, within CA264_15015 at 3522.753 kb on - strand, within CA264_15015 at 3522.757 kb on + strand, within CA264_15015 at 3522.757 kb on + strand, within CA264_15015 at 3522.757 kb on + strand, within CA264_15015 at 3522.757 kb on + strand, within CA264_15015 at 3522.757 kb on + strand, within CA264_15015 at 3522.757 kb on + strand, within CA264_15015 at 3522.758 kb on - strand, within CA264_15015 at 3522.758 kb on - strand, within CA264_15015 at 3522.758 kb on - strand, within CA264_15015 at 3522.758 kb on - strand, within CA264_15015 at 3522.758 kb on - strand, within CA264_15015 at 3522.759 kb on + strand, within CA264_15015 at 3522.760 kb on - strand, within CA264_15015 at 3522.763 kb on + strand, within CA264_15015 at 3522.763 kb on + strand, within CA264_15015 at 3522.764 kb on - strand, within CA264_15015 at 3522.764 kb on - strand, within CA264_15015 at 3522.764 kb on - strand, within CA264_15015 at 3522.792 kb on - strand, within CA264_15015 at 3522.792 kb on - strand, within CA264_15015 at 3522.808 kb on + strand, within CA264_15015 at 3522.865 kb on - strand, within CA264_15015 at 3522.865 kb on - strand, within CA264_15015 at 3522.868 kb on + strand, within CA264_15015 at 3522.868 kb on + strand, within CA264_15015 at 3522.869 kb on - strand, within CA264_15015 at 3522.869 kb on - strand, within CA264_15015 at 3522.892 kb on + strand at 3522.893 kb on - strand at 3522.893 kb on - strand at 3523.016 kb on + strand at 3523.017 kb on - strand at 3523.028 kb on + strand at 3523.028 kb on + strand at 3523.035 kb on + strand at 3523.035 kb on + strand at 3523.036 kb on - strand at 3523.036 kb on - strand at 3523.036 kb on - strand at 3523.036 kb on - strand at 3523.036 kb on - strand at 3523.036 kb on - strand at 3523.039 kb on + strand at 3523.040 kb on - strand at 3523.040 kb on - strand at 3523.086 kb on - strand at 3523.098 kb on + strand at 3523.098 kb on + strand at 3523.098 kb on + strand at 3523.099 kb on - strand at 3523.100 kb on + strand at 3523.153 kb on + strand at 3523.153 kb on + strand at 3523.154 kb on - strand at 3523.156 kb on - strand at 3523.167 kb on + strand at 3523.276 kb on + strand at 3523.369 kb on + strand at 3523.409 kb on + strand, within CA264_15020 at 3523.573 kb on - strand, within CA264_15020 at 3523.768 kb on - strand, within CA264_15020 at 3523.772 kb on - strand, within CA264_15020 at 3523.772 kb on - strand, within CA264_15020 at 3523.830 kb on + strand, within CA264_15020 at 3524.040 kb on - strand, within CA264_15020 at 3524.040 kb on - strand, within CA264_15020 at 3524.109 kb on + strand, within CA264_15020 at 3524.113 kb on - strand, within CA264_15020 at 3524.219 kb on + strand, within CA264_15020 at 3524.333 kb on + strand, within CA264_15020 at 3524.517 kb on - strand, within CA264_15020 at 3524.737 kb on - strand, within CA264_15020 at 3524.960 kb on - strand, within CA264_15020 at 3524.960 kb on - strand, within CA264_15020 at 3524.964 kb on + strand, within CA264_15020 at 3524.981 kb on - strand, within CA264_15020 at 3525.151 kb on - strand at 3525.155 kb on + strand at 3525.155 kb on + strand at 3525.261 kb on + strand at 3525.358 kb on + strand at 3525.360 kb on + strand at 3525.360 kb on + strand at 3525.360 kb on + strand at 3525.360 kb on + strand at 3525.470 kb on + strand at 3525.471 kb on - strand at 3525.471 kb on - strand at 3525.503 kb on - strand at 3525.518 kb on - strand at 3525.530 kb on - strand at 3525.538 kb on - strand at 3525.604 kb on - strand at 3525.612 kb on + strand at 3525.613 kb on - strand at 3525.641 kb on + strand at 3525.642 kb on - strand at 3525.742 kb on + strand at 3525.791 kb on + strand at 3525.793 kb on + strand at 3525.793 kb on + strand at 3525.793 kb on + strand at 3525.910 kb on + strand at 3525.910 kb on + strand at 3525.910 kb on + strand at 3525.912 kb on + strand at 3525.913 kb on - strand at 3525.913 kb on - strand at 3525.935 kb on + strand at 3525.953 kb on - strand at 3525.980 kb on + strand at 3526.068 kb on + strand at 3526.068 kb on + strand at 3526.069 kb on - strand at 3526.069 kb on - strand at 3526.069 kb on - strand at 3526.069 kb on - strand at 3526.072 kb on + strand at 3526.094 kb on - strand at 3526.094 kb on - strand at 3526.094 kb on - strand at 3526.150 kb on + strand at 3526.151 kb on - strand at 3526.168 kb on + strand at 3526.168 kb on + strand at 3526.169 kb on - strand at 3526.210 kb on - strand at 3526.211 kb on + strand at 3526.212 kb on - strand at 3526.212 kb on - strand at 3526.212 kb on - strand at 3526.249 kb on - strand at 3526.249 kb on - strand at 3526.285 kb on + strand at 3526.285 kb on + strand at 3526.285 kb on + strand at 3526.285 kb on + strand at 3526.286 kb on - strand at 3526.286 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 3,522,316 - CA264_15010 0.76 +2.9 3,522,356 - CA264_15010 0.83 +1.9 3,522,456 - -1.5 3,522,459 + -0.2 3,522,460 - -0.1 3,522,460 - -0.2 3,522,509 + +1.2 3,522,509 + +0.7 3,522,554 + -1.3 3,522,555 - -0.4 3,522,569 + CA264_15015 0.11 -0.7 3,522,630 + CA264_15015 0.26 +0.1 3,522,630 + CA264_15015 0.26 +0.1 3,522,631 - CA264_15015 0.26 +1.1 3,522,653 + CA264_15015 0.32 +0.6 3,522,657 + CA264_15015 0.33 +0.1 3,522,657 + CA264_15015 0.33 +0.3 3,522,657 + CA264_15015 0.33 -1.1 3,522,657 + CA264_15015 0.33 +0.1 3,522,658 - CA264_15015 0.33 -1.2 3,522,658 - CA264_15015 0.33 -1.9 3,522,661 + CA264_15015 0.34 -0.6 3,522,662 - CA264_15015 0.34 -0.1 3,522,664 + CA264_15015 0.34 +0.3 3,522,665 - CA264_15015 0.35 -0.1 3,522,689 + CA264_15015 0.40 +0.9 3,522,690 - CA264_15015 0.41 -0.4 3,522,713 + CA264_15015 0.46 +0.6 3,522,737 - CA264_15015 0.52 -0.4 3,522,744 + CA264_15015 0.54 -0.6 3,522,745 - CA264_15015 0.54 -0.5 3,522,747 + CA264_15015 0.55 +0.4 3,522,748 - CA264_15015 0.55 -0.1 3,522,753 - CA264_15015 0.56 -0.3 3,522,757 + CA264_15015 0.57 +1.0 3,522,757 + CA264_15015 0.57 -0.0 3,522,757 + CA264_15015 0.57 +0.4 3,522,757 + CA264_15015 0.57 -1.1 3,522,757 + CA264_15015 0.57 +1.8 3,522,757 + CA264_15015 0.57 -0.3 3,522,758 - CA264_15015 0.57 -0.6 3,522,758 - CA264_15015 0.57 +0.6 3,522,758 - CA264_15015 0.57 +0.7 3,522,758 - CA264_15015 0.57 +1.1 3,522,758 - CA264_15015 0.57 +0.0 3,522,759 + CA264_15015 0.58 +0.4 3,522,760 - CA264_15015 0.58 +0.1 3,522,763 + CA264_15015 0.59 +1.1 3,522,763 + CA264_15015 0.59 -0.4 3,522,764 - CA264_15015 0.59 -1.0 3,522,764 - CA264_15015 0.59 -0.3 3,522,764 - CA264_15015 0.59 +0.2 3,522,792 - CA264_15015 0.66 -0.5 3,522,792 - CA264_15015 0.66 -0.2 3,522,808 + CA264_15015 0.70 -1.7 3,522,865 - CA264_15015 0.84 -0.3 3,522,865 - CA264_15015 0.84 -0.4 3,522,868 + CA264_15015 0.84 +0.7 3,522,868 + CA264_15015 0.84 +0.5 3,522,869 - CA264_15015 0.85 -0.2 3,522,869 - CA264_15015 0.85 +0.0 3,522,892 + +0.3 3,522,893 - +0.7 3,522,893 - +0.0 3,523,016 + +0.4 3,523,017 - -1.1 3,523,028 + -0.1 3,523,028 + +0.9 3,523,035 + +0.3 3,523,035 + -0.5 3,523,036 - -0.9 3,523,036 - +0.2 3,523,036 - -0.5 3,523,036 - -0.9 3,523,036 - +0.9 3,523,036 - -0.6 3,523,039 + +2.0 3,523,040 - +0.0 3,523,040 - +0.4 3,523,086 - -0.0 3,523,098 + -0.3 3,523,098 + +0.1 3,523,098 + +0.2 3,523,099 - -0.2 3,523,100 + +0.9 3,523,153 + -0.2 3,523,153 + +0.3 3,523,154 - -0.2 3,523,156 - -0.7 3,523,167 + -0.7 3,523,276 + +1.9 3,523,369 + +1.9 3,523,409 + CA264_15020 0.10 +2.5 3,523,573 - CA264_15020 0.18 +1.6 3,523,768 - CA264_15020 0.28 +0.7 3,523,772 - CA264_15020 0.28 -0.1 3,523,772 - CA264_15020 0.28 +1.8 3,523,830 + CA264_15020 0.31 +1.6 3,524,040 - CA264_15020 0.41 +0.9 3,524,040 - CA264_15020 0.41 +0.8 3,524,109 + CA264_15020 0.44 +0.9 3,524,113 - CA264_15020 0.44 +0.3 3,524,219 + CA264_15020 0.49 -0.1 3,524,333 + CA264_15020 0.54 -0.1 3,524,517 - CA264_15020 0.63 +0.9 3,524,737 - CA264_15020 0.74 +0.6 3,524,960 - CA264_15020 0.84 +2.2 3,524,960 - CA264_15020 0.84 +0.9 3,524,964 + CA264_15020 0.85 -0.1 3,524,981 - CA264_15020 0.85 +0.3 3,525,151 - +0.5 3,525,155 + +0.8 3,525,155 + +0.7 3,525,261 + +0.2 3,525,358 + +1.2 3,525,360 + -1.0 3,525,360 + -1.5 3,525,360 + +0.5 3,525,360 + +0.5 3,525,470 + -0.7 3,525,471 - +0.5 3,525,471 - +0.1 3,525,503 - -1.4 3,525,518 - +0.3 3,525,530 - -0.6 3,525,538 - +0.4 3,525,604 - +0.3 3,525,612 + -1.3 3,525,613 - -0.4 3,525,641 + +0.1 3,525,642 - +0.1 3,525,742 + -0.6 3,525,791 + -0.7 3,525,793 + -0.4 3,525,793 + -0.3 3,525,793 + +0.1 3,525,910 + -1.2 3,525,910 + +0.5 3,525,910 + -0.1 3,525,912 + +0.6 3,525,913 - +0.0 3,525,913 - -0.1 3,525,935 + +0.7 3,525,953 - +0.4 3,525,980 + +1.2 3,526,068 + -1.1 3,526,068 + +0.9 3,526,069 - +0.1 3,526,069 - -0.8 3,526,069 - +0.5 3,526,069 - +0.6 3,526,072 + -0.2 3,526,094 - +0.8 3,526,094 - -0.1 3,526,094 - -0.1 3,526,150 + +0.1 3,526,151 - +0.2 3,526,168 + -0.3 3,526,168 + -0.2 3,526,169 - -0.6 3,526,210 - -1.4 3,526,211 + +0.3 3,526,212 - -1.1 3,526,212 - -0.2 3,526,212 - +0.3 3,526,249 - -1.2 3,526,249 - +0.7 3,526,285 + +0.3 3,526,285 + -0.1 3,526,285 + -1.1 3,526,285 + +1.2 3,526,286 - +1.0 3,526,286 - -0.0
Or see this region's nucleotide sequence