Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14455

Experiment: Ponti_ML7_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14450 and CA264_14455 are separated by 372 nucleotidesCA264_14455 and CA264_14460 are separated by 7 nucleotides CA264_14450: CA264_14450 - endonuclease/exonuclease/phosphatase, at 3,390,169 to 3,391,302 _14450 CA264_14455: CA264_14455 - ribosome maturation factor, at 3,391,675 to 3,392,121 _14455 CA264_14460: CA264_14460 - transcription termination/antitermination protein NusA, at 3,392,129 to 3,393,382 _14460 Position (kb) 3391 3392 3393Strain fitness (log2 ratio) -1 0 1 2 3at 3390.728 kb on + strand, within CA264_14450at 3390.836 kb on + strand, within CA264_14450at 3391.056 kb on - strand, within CA264_14450at 3391.294 kb on - strandat 3391.321 kb on + strandat 3391.400 kb on + strandat 3391.400 kb on + strandat 3391.401 kb on - strandat 3391.401 kb on - strandat 3391.402 kb on + strandat 3391.403 kb on - strandat 3391.423 kb on + strandat 3391.423 kb on + strandat 3391.425 kb on + strandat 3391.429 kb on - strandat 3391.504 kb on + strandat 3391.505 kb on - strandat 3391.559 kb on + strandat 3391.627 kb on - strandat 3391.627 kb on - strandat 3391.633 kb on + strandat 3391.644 kb on + strandat 3391.710 kb on + strandat 3391.711 kb on - strandat 3391.711 kb on - strandat 3391.712 kb on + strandat 3391.712 kb on + strandat 3391.862 kb on - strand, within CA264_14455at 3391.862 kb on - strand, within CA264_14455at 3391.920 kb on + strand, within CA264_14455at 3392.056 kb on + strand, within CA264_14455at 3392.056 kb on + strand, within CA264_14455at 3392.056 kb on + strand, within CA264_14455at 3392.057 kb on - strand, within CA264_14455

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Per-strain Table

Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq
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3,390,728 + CA264_14450 0.49 +2.9
3,390,836 + CA264_14450 0.59 +1.8
3,391,056 - CA264_14450 0.78 +1.5
3,391,294 - +0.3
3,391,321 + +0.9
3,391,400 + +1.1
3,391,400 + +1.2
3,391,401 - +0.5
3,391,401 - +0.6
3,391,402 + +2.2
3,391,403 - +0.7
3,391,423 + +0.9
3,391,423 + +1.1
3,391,425 + +2.9
3,391,429 - +0.6
3,391,504 + +0.3
3,391,505 - +1.2
3,391,559 + +1.2
3,391,627 - +0.7
3,391,627 - +2.7
3,391,633 + +0.2
3,391,644 + +0.1
3,391,710 + +0.3
3,391,711 - +1.3
3,391,711 - -0.1
3,391,712 + +1.9
3,391,712 + +0.9
3,391,862 - CA264_14455 0.42 +1.5
3,391,862 - CA264_14455 0.42 +1.4
3,391,920 + CA264_14455 0.55 +1.5
3,392,056 + CA264_14455 0.85 +1.3
3,392,056 + CA264_14455 0.85 +3.5
3,392,056 + CA264_14455 0.85 +0.8
3,392,057 - CA264_14455 0.85 +1.6

Or see this region's nucleotide sequence