Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12665 and CA264_12670 are separated by 104 nucleotides CA264_12670 and CA264_12675 overlap by 14 nucleotides CA264_12675 and CA264_12680 are separated by 5 nucleotides
CA264_12665: CA264_12665 - phosphatase PAP2 family protein, at 2,956,083 to 2,956,769
_12665
CA264_12670: CA264_12670 - dolichol-phosphate mannosyltransferase, at 2,956,874 to 2,957,635
_12670
CA264_12675: CA264_12675 - lauroyl acyltransferase, at 2,957,622 to 2,958,278
_12675
CA264_12680: CA264_12680 - hypothetical protein, at 2,958,284 to 2,959,918
_12680
Position (kb)
2957
2958
2959 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2956.654 kb on + strand, within CA264_12665 at 2956.654 kb on + strand, within CA264_12665 at 2956.654 kb on + strand, within CA264_12665 at 2956.726 kb on - strand at 2956.782 kb on - strand at 2956.845 kb on - strand at 2956.857 kb on + strand at 2956.858 kb on - strand at 2956.860 kb on - strand at 2956.923 kb on + strand at 2956.925 kb on + strand at 2956.925 kb on + strand at 2956.996 kb on + strand, within CA264_12670 at 2956.997 kb on - strand, within CA264_12670 at 2957.049 kb on + strand, within CA264_12670 at 2957.050 kb on - strand, within CA264_12670 at 2957.078 kb on + strand, within CA264_12670 at 2957.084 kb on + strand, within CA264_12670 at 2957.086 kb on + strand, within CA264_12670 at 2957.086 kb on + strand, within CA264_12670 at 2957.165 kb on + strand, within CA264_12670 at 2957.276 kb on - strand, within CA264_12670 at 2957.294 kb on - strand, within CA264_12670 at 2957.294 kb on - strand, within CA264_12670 at 2957.379 kb on - strand, within CA264_12670 at 2957.450 kb on - strand, within CA264_12670 at 2957.505 kb on - strand, within CA264_12670 at 2957.505 kb on - strand, within CA264_12670 at 2957.505 kb on - strand, within CA264_12670 at 2957.574 kb on - strand at 2957.578 kb on + strand at 2957.579 kb on - strand at 2957.579 kb on - strand at 2957.582 kb on + strand at 2957.582 kb on + strand at 2957.590 kb on - strand at 2957.645 kb on - strand at 2957.646 kb on + strand at 2957.647 kb on - strand at 2957.691 kb on - strand, within CA264_12675 at 2957.705 kb on + strand, within CA264_12675 at 2957.808 kb on - strand, within CA264_12675 at 2957.838 kb on + strand, within CA264_12675 at 2957.838 kb on + strand, within CA264_12675 at 2957.847 kb on + strand, within CA264_12675 at 2957.848 kb on - strand, within CA264_12675 at 2957.856 kb on - strand, within CA264_12675 at 2957.969 kb on + strand, within CA264_12675 at 2957.969 kb on + strand, within CA264_12675 at 2957.969 kb on + strand, within CA264_12675 at 2957.970 kb on - strand, within CA264_12675 at 2957.970 kb on - strand, within CA264_12675 at 2957.970 kb on - strand, within CA264_12675 at 2957.978 kb on + strand, within CA264_12675 at 2958.009 kb on - strand, within CA264_12675 at 2958.058 kb on - strand, within CA264_12675 at 2958.143 kb on + strand, within CA264_12675 at 2958.144 kb on - strand, within CA264_12675 at 2958.144 kb on - strand, within CA264_12675 at 2958.150 kb on + strand, within CA264_12675 at 2958.218 kb on + strand at 2958.224 kb on + strand at 2958.323 kb on + strand at 2958.359 kb on + strand at 2958.360 kb on - strand at 2958.361 kb on + strand at 2958.362 kb on - strand at 2958.404 kb on + strand at 2958.497 kb on + strand, within CA264_12680 at 2958.497 kb on + strand, within CA264_12680 at 2958.498 kb on - strand, within CA264_12680 at 2958.586 kb on - strand, within CA264_12680 at 2958.758 kb on - strand, within CA264_12680 at 2958.758 kb on - strand, within CA264_12680 at 2958.884 kb on - strand, within CA264_12680 at 2958.969 kb on - strand, within CA264_12680 at 2958.978 kb on + strand, within CA264_12680 at 2959.001 kb on + strand, within CA264_12680 at 2959.001 kb on + strand, within CA264_12680 at 2959.002 kb on - strand, within CA264_12680 at 2959.012 kb on + strand, within CA264_12680 at 2959.019 kb on - strand, within CA264_12680 at 2959.076 kb on + strand, within CA264_12680 at 2959.119 kb on + strand, within CA264_12680 at 2959.119 kb on + strand, within CA264_12680 at 2959.119 kb on + strand, within CA264_12680 at 2959.119 kb on + strand, within CA264_12680 at 2959.120 kb on - strand, within CA264_12680 at 2959.177 kb on + strand, within CA264_12680 at 2959.231 kb on + strand, within CA264_12680
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 2,956,654 + CA264_12665 0.83 +1.3 2,956,654 + CA264_12665 0.83 -0.0 2,956,654 + CA264_12665 0.83 -0.0 2,956,726 - +0.3 2,956,782 - +1.8 2,956,845 - -1.0 2,956,857 + +0.0 2,956,858 - +0.3 2,956,860 - +1.4 2,956,923 + -0.2 2,956,925 + -3.0 2,956,925 + -0.5 2,956,996 + CA264_12670 0.16 +2.0 2,956,997 - CA264_12670 0.16 -0.8 2,957,049 + CA264_12670 0.23 -1.1 2,957,050 - CA264_12670 0.23 -0.4 2,957,078 + CA264_12670 0.27 -1.1 2,957,084 + CA264_12670 0.28 +0.3 2,957,086 + CA264_12670 0.28 +0.4 2,957,086 + CA264_12670 0.28 -0.2 2,957,165 + CA264_12670 0.38 -0.4 2,957,276 - CA264_12670 0.53 -0.7 2,957,294 - CA264_12670 0.55 -0.3 2,957,294 - CA264_12670 0.55 -0.0 2,957,379 - CA264_12670 0.66 -0.0 2,957,450 - CA264_12670 0.76 -0.2 2,957,505 - CA264_12670 0.83 -0.1 2,957,505 - CA264_12670 0.83 -0.4 2,957,505 - CA264_12670 0.83 -0.4 2,957,574 - -2.0 2,957,578 + +0.2 2,957,579 - -0.0 2,957,579 - +1.0 2,957,582 + -0.3 2,957,582 + +0.6 2,957,590 - +1.0 2,957,645 - +1.5 2,957,646 + -1.0 2,957,647 - +2.0 2,957,691 - CA264_12675 0.11 -1.2 2,957,705 + CA264_12675 0.13 +1.0 2,957,808 - CA264_12675 0.28 +0.3 2,957,838 + CA264_12675 0.33 -0.2 2,957,838 + CA264_12675 0.33 -0.2 2,957,847 + CA264_12675 0.34 +0.8 2,957,848 - CA264_12675 0.34 +0.6 2,957,856 - CA264_12675 0.36 +0.1 2,957,969 + CA264_12675 0.53 +0.6 2,957,969 + CA264_12675 0.53 -0.4 2,957,969 + CA264_12675 0.53 -0.6 2,957,970 - CA264_12675 0.53 -1.0 2,957,970 - CA264_12675 0.53 -1.4 2,957,970 - CA264_12675 0.53 -0.3 2,957,978 + CA264_12675 0.54 +1.3 2,958,009 - CA264_12675 0.59 +0.4 2,958,058 - CA264_12675 0.66 -1.9 2,958,143 + CA264_12675 0.79 -0.2 2,958,144 - CA264_12675 0.79 -1.4 2,958,144 - CA264_12675 0.79 -0.5 2,958,150 + CA264_12675 0.80 -1.6 2,958,218 + +0.3 2,958,224 + +0.4 2,958,323 + -0.0 2,958,359 + -0.6 2,958,360 - +0.5 2,958,361 + +0.0 2,958,362 - +0.6 2,958,404 + -0.0 2,958,497 + CA264_12680 0.13 -0.5 2,958,497 + CA264_12680 0.13 -0.0 2,958,498 - CA264_12680 0.13 -0.6 2,958,586 - CA264_12680 0.18 -0.4 2,958,758 - CA264_12680 0.29 -1.0 2,958,758 - CA264_12680 0.29 -0.1 2,958,884 - CA264_12680 0.37 +2.0 2,958,969 - CA264_12680 0.42 -0.4 2,958,978 + CA264_12680 0.42 -0.3 2,959,001 + CA264_12680 0.44 -0.6 2,959,001 + CA264_12680 0.44 +1.5 2,959,002 - CA264_12680 0.44 -0.3 2,959,012 + CA264_12680 0.45 -0.7 2,959,019 - CA264_12680 0.45 +0.1 2,959,076 + CA264_12680 0.48 +0.5 2,959,119 + CA264_12680 0.51 +1.0 2,959,119 + CA264_12680 0.51 +1.0 2,959,119 + CA264_12680 0.51 +0.6 2,959,119 + CA264_12680 0.51 +0.0 2,959,120 - CA264_12680 0.51 -0.3 2,959,177 + CA264_12680 0.55 -0.0 2,959,231 + CA264_12680 0.58 -0.2
Or see this region's nucleotide sequence