Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12490 and CA264_12495 are separated by 149 nucleotides CA264_12495 and CA264_12500 are separated by 178 nucleotides
CA264_12490: CA264_12490 - phosphohydrolase, at 2,908,530 to 2,909,762
_12490
CA264_12495: CA264_12495 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 2,909,912 to 2,910,934
_12495
CA264_12500: CA264_12500 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, at 2,911,113 to 2,912,507
_12500
Position (kb)
2909
2910
2911 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2908.958 kb on + strand, within CA264_12490 at 2908.959 kb on - strand, within CA264_12490 at 2908.959 kb on - strand, within CA264_12490 at 2909.044 kb on - strand, within CA264_12490 at 2909.044 kb on - strand, within CA264_12490 at 2909.055 kb on + strand, within CA264_12490 at 2909.068 kb on + strand, within CA264_12490 at 2909.084 kb on + strand, within CA264_12490 at 2909.087 kb on + strand, within CA264_12490 at 2909.088 kb on - strand, within CA264_12490 at 2909.111 kb on + strand, within CA264_12490 at 2909.140 kb on - strand, within CA264_12490 at 2909.178 kb on + strand, within CA264_12490 at 2909.189 kb on - strand, within CA264_12490 at 2909.190 kb on + strand, within CA264_12490 at 2909.190 kb on + strand, within CA264_12490 at 2909.190 kb on + strand, within CA264_12490 at 2909.321 kb on + strand, within CA264_12490 at 2909.321 kb on + strand, within CA264_12490 at 2909.354 kb on - strand, within CA264_12490 at 2909.454 kb on - strand, within CA264_12490 at 2909.474 kb on + strand, within CA264_12490 at 2909.482 kb on - strand, within CA264_12490 at 2909.547 kb on + strand, within CA264_12490 at 2909.548 kb on - strand, within CA264_12490 at 2909.548 kb on - strand, within CA264_12490 at 2909.634 kb on - strand, within CA264_12490 at 2909.709 kb on + strand at 2909.710 kb on - strand at 2909.710 kb on - strand at 2909.710 kb on - strand at 2909.711 kb on + strand at 2909.712 kb on - strand at 2909.712 kb on - strand at 2909.712 kb on - strand at 2909.817 kb on - strand at 2909.906 kb on + strand at 2910.946 kb on - strand at 2910.946 kb on - strand at 2910.968 kb on + strand at 2910.988 kb on - strand at 2910.992 kb on + strand at 2910.992 kb on + strand at 2911.031 kb on + strand at 2911.031 kb on + strand at 2911.034 kb on - strand at 2911.034 kb on - strand at 2911.034 kb on - strand at 2911.037 kb on + strand at 2911.037 kb on + strand at 2911.059 kb on + strand at 2911.079 kb on + strand at 2911.102 kb on + strand at 2911.103 kb on - strand at 2911.103 kb on - strand at 2911.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 2,908,958 + CA264_12490 0.35 +0.2 2,908,959 - CA264_12490 0.35 +1.4 2,908,959 - CA264_12490 0.35 +0.0 2,909,044 - CA264_12490 0.42 +1.0 2,909,044 - CA264_12490 0.42 +1.0 2,909,055 + CA264_12490 0.43 +1.3 2,909,068 + CA264_12490 0.44 +1.4 2,909,084 + CA264_12490 0.45 -0.3 2,909,087 + CA264_12490 0.45 +1.5 2,909,088 - CA264_12490 0.45 +2.0 2,909,111 + CA264_12490 0.47 -0.5 2,909,140 - CA264_12490 0.49 +0.7 2,909,178 + CA264_12490 0.53 +1.0 2,909,189 - CA264_12490 0.53 +0.5 2,909,190 + CA264_12490 0.54 -0.0 2,909,190 + CA264_12490 0.54 +0.5 2,909,190 + CA264_12490 0.54 +0.6 2,909,321 + CA264_12490 0.64 +0.1 2,909,321 + CA264_12490 0.64 -0.1 2,909,354 - CA264_12490 0.67 -0.2 2,909,454 - CA264_12490 0.75 +0.3 2,909,474 + CA264_12490 0.77 -0.8 2,909,482 - CA264_12490 0.77 +0.4 2,909,547 + CA264_12490 0.82 +0.6 2,909,548 - CA264_12490 0.83 -0.0 2,909,548 - CA264_12490 0.83 +0.0 2,909,634 - CA264_12490 0.90 -0.3 2,909,709 + -0.3 2,909,710 - +0.1 2,909,710 - +0.2 2,909,710 - -0.4 2,909,711 + -0.3 2,909,712 - +0.5 2,909,712 - -0.1 2,909,712 - +0.8 2,909,817 - +0.2 2,909,906 + -0.1 2,910,946 - +1.1 2,910,946 - -0.9 2,910,968 + -0.2 2,910,988 - +0.4 2,910,992 + +0.2 2,910,992 + -1.6 2,911,031 + +1.1 2,911,031 + +0.6 2,911,034 - -0.6 2,911,034 - -1.5 2,911,034 - -0.9 2,911,037 + -0.5 2,911,037 + -0.1 2,911,059 + +1.0 2,911,079 + -2.4 2,911,102 + +0.6 2,911,103 - +0.2 2,911,103 - +1.0 2,911,103 - -0.2
Or see this region's nucleotide sequence