Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11680 and CA264_11685 are separated by 133 nucleotides CA264_11685 and CA264_11690 overlap by 14 nucleotides
CA264_11680: CA264_11680 - hypothetical protein, at 2,723,011 to 2,723,691
_11680
CA264_11685: CA264_11685 - hypothetical protein, at 2,723,825 to 2,724,358
_11685
CA264_11690: CA264_11690 - hypothetical protein, at 2,724,345 to 2,725,223
_11690
Position (kb)
2723
2724
2725 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2722.829 kb on + strand at 2722.831 kb on + strand at 2722.835 kb on + strand at 2722.835 kb on + strand at 2722.835 kb on + strand at 2722.835 kb on + strand at 2722.835 kb on + strand at 2722.836 kb on - strand at 2722.836 kb on - strand at 2722.837 kb on + strand at 2722.837 kb on + strand at 2722.894 kb on + strand at 2722.894 kb on + strand at 2722.897 kb on - strand at 2722.913 kb on - strand at 2722.913 kb on - strand at 2722.914 kb on + strand at 2722.914 kb on + strand at 2722.914 kb on + strand at 2722.914 kb on + strand at 2722.914 kb on + strand at 2722.914 kb on + strand at 2722.915 kb on - strand at 2722.919 kb on - strand at 2722.946 kb on - strand at 2722.946 kb on - strand at 2722.946 kb on - strand at 2723.010 kb on + strand at 2723.010 kb on + strand at 2723.057 kb on + strand at 2723.058 kb on - strand at 2723.058 kb on - strand at 2723.058 kb on - strand at 2723.058 kb on - strand at 2723.110 kb on - strand, within CA264_11680 at 2723.130 kb on - strand, within CA264_11680 at 2723.164 kb on + strand, within CA264_11680 at 2723.164 kb on + strand, within CA264_11680 at 2723.165 kb on - strand, within CA264_11680 at 2723.192 kb on + strand, within CA264_11680 at 2723.193 kb on - strand, within CA264_11680 at 2723.288 kb on - strand, within CA264_11680 at 2723.302 kb on - strand, within CA264_11680 at 2723.310 kb on + strand, within CA264_11680 at 2723.310 kb on + strand, within CA264_11680 at 2723.311 kb on - strand, within CA264_11680 at 2723.312 kb on + strand, within CA264_11680 at 2723.312 kb on + strand, within CA264_11680 at 2723.313 kb on - strand, within CA264_11680 at 2723.347 kb on + strand, within CA264_11680 at 2723.395 kb on + strand, within CA264_11680 at 2723.453 kb on + strand, within CA264_11680 at 2723.504 kb on + strand, within CA264_11680 at 2723.508 kb on + strand, within CA264_11680 at 2723.509 kb on - strand, within CA264_11680 at 2723.519 kb on + strand, within CA264_11680 at 2723.585 kb on + strand, within CA264_11680 at 2723.632 kb on + strand at 2723.632 kb on + strand at 2723.638 kb on - strand at 2723.703 kb on - strand at 2723.712 kb on - strand at 2723.713 kb on + strand at 2723.714 kb on - strand at 2723.718 kb on + strand at 2723.718 kb on + strand at 2723.718 kb on + strand at 2723.719 kb on - strand at 2723.719 kb on - strand at 2723.723 kb on + strand at 2723.734 kb on + strand at 2723.753 kb on - strand at 2723.788 kb on + strand at 2723.797 kb on + strand at 2723.797 kb on + strand at 2723.803 kb on - strand at 2723.976 kb on + strand, within CA264_11685 at 2723.976 kb on + strand, within CA264_11685 at 2723.976 kb on + strand, within CA264_11685 at 2723.977 kb on - strand, within CA264_11685 at 2724.080 kb on + strand, within CA264_11685 at 2724.101 kb on - strand, within CA264_11685 at 2724.101 kb on - strand, within CA264_11685 at 2724.124 kb on + strand, within CA264_11685 at 2724.203 kb on + strand, within CA264_11685 at 2724.204 kb on - strand, within CA264_11685 at 2724.204 kb on - strand, within CA264_11685 at 2724.303 kb on + strand, within CA264_11685 at 2724.311 kb on + strand at 2724.329 kb on - strand at 2724.336 kb on + strand at 2724.336 kb on + strand at 2724.369 kb on + strand at 2724.411 kb on - strand at 2724.420 kb on + strand at 2724.430 kb on + strand at 2724.469 kb on + strand, within CA264_11690 at 2724.505 kb on - strand, within CA264_11690 at 2724.505 kb on - strand, within CA264_11690 at 2724.506 kb on + strand, within CA264_11690 at 2724.507 kb on - strand, within CA264_11690 at 2724.507 kb on - strand, within CA264_11690 at 2724.549 kb on + strand, within CA264_11690 at 2724.561 kb on + strand, within CA264_11690 at 2724.562 kb on - strand, within CA264_11690 at 2724.573 kb on + strand, within CA264_11690 at 2724.623 kb on - strand, within CA264_11690 at 2724.681 kb on - strand, within CA264_11690 at 2724.681 kb on - strand, within CA264_11690 at 2724.689 kb on + strand, within CA264_11690 at 2724.689 kb on + strand, within CA264_11690 at 2724.750 kb on + strand, within CA264_11690 at 2724.782 kb on - strand, within CA264_11690 at 2724.841 kb on - strand, within CA264_11690 at 2724.882 kb on + strand, within CA264_11690 at 2724.961 kb on - strand, within CA264_11690 at 2724.968 kb on - strand, within CA264_11690 at 2725.000 kb on - strand, within CA264_11690 at 2725.088 kb on - strand, within CA264_11690 at 2725.129 kb on + strand, within CA264_11690 at 2725.180 kb on + strand at 2725.181 kb on - strand at 2725.329 kb on - strand at 2725.329 kb on - strand at 2725.330 kb on + strand at 2725.331 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 2,722,829 + -1.5 2,722,831 + -0.5 2,722,835 + -0.8 2,722,835 + -0.2 2,722,835 + +0.1 2,722,835 + +1.2 2,722,835 + -1.0 2,722,836 - -0.1 2,722,836 - +0.1 2,722,837 + +0.0 2,722,837 + +0.6 2,722,894 + +1.8 2,722,894 + +2.0 2,722,897 - -0.0 2,722,913 - +0.1 2,722,913 - +0.4 2,722,914 + -1.0 2,722,914 + +0.4 2,722,914 + +0.6 2,722,914 + -0.4 2,722,914 + -0.4 2,722,914 + +0.1 2,722,915 - +1.0 2,722,919 - +0.6 2,722,946 - -1.5 2,722,946 - +1.0 2,722,946 - +0.4 2,723,010 + -0.1 2,723,010 + -0.3 2,723,057 + +0.2 2,723,058 - -0.1 2,723,058 - -0.6 2,723,058 - -0.5 2,723,058 - -1.0 2,723,110 - CA264_11680 0.15 -0.5 2,723,130 - CA264_11680 0.17 -0.3 2,723,164 + CA264_11680 0.22 +1.0 2,723,164 + CA264_11680 0.22 -0.4 2,723,165 - CA264_11680 0.23 -0.6 2,723,192 + CA264_11680 0.27 -0.8 2,723,193 - CA264_11680 0.27 +0.3 2,723,288 - CA264_11680 0.41 +0.2 2,723,302 - CA264_11680 0.43 +0.7 2,723,310 + CA264_11680 0.44 -0.2 2,723,310 + CA264_11680 0.44 -0.0 2,723,311 - CA264_11680 0.44 +0.0 2,723,312 + CA264_11680 0.44 +0.0 2,723,312 + CA264_11680 0.44 +1.0 2,723,313 - CA264_11680 0.44 -0.7 2,723,347 + CA264_11680 0.49 -1.6 2,723,395 + CA264_11680 0.56 -0.1 2,723,453 + CA264_11680 0.65 -0.1 2,723,504 + CA264_11680 0.72 +0.2 2,723,508 + CA264_11680 0.73 -0.3 2,723,509 - CA264_11680 0.73 +0.1 2,723,519 + CA264_11680 0.75 +1.4 2,723,585 + CA264_11680 0.84 -0.3 2,723,632 + +0.4 2,723,632 + -0.6 2,723,638 - +0.2 2,723,703 - -0.3 2,723,712 - +0.5 2,723,713 + +0.8 2,723,714 - -0.3 2,723,718 + +0.0 2,723,718 + -0.9 2,723,718 + -1.2 2,723,719 - +0.5 2,723,719 - -0.4 2,723,723 + -0.1 2,723,734 + -0.7 2,723,753 - +0.4 2,723,788 + -0.0 2,723,797 + +0.6 2,723,797 + +1.7 2,723,803 - -0.3 2,723,976 + CA264_11685 0.28 -0.6 2,723,976 + CA264_11685 0.28 +0.5 2,723,976 + CA264_11685 0.28 +1.6 2,723,977 - CA264_11685 0.28 +1.6 2,724,080 + CA264_11685 0.48 +1.3 2,724,101 - CA264_11685 0.52 +0.5 2,724,101 - CA264_11685 0.52 +0.1 2,724,124 + CA264_11685 0.56 +0.4 2,724,203 + CA264_11685 0.71 +0.5 2,724,204 - CA264_11685 0.71 -0.4 2,724,204 - CA264_11685 0.71 +1.3 2,724,303 + CA264_11685 0.90 -1.3 2,724,311 + -0.4 2,724,329 - -0.5 2,724,336 + +0.1 2,724,336 + +1.8 2,724,369 + -1.4 2,724,411 - -0.2 2,724,420 + -0.0 2,724,430 + -0.4 2,724,469 + CA264_11690 0.14 +2.0 2,724,505 - CA264_11690 0.18 +0.2 2,724,505 - CA264_11690 0.18 +2.6 2,724,506 + CA264_11690 0.18 -0.3 2,724,507 - CA264_11690 0.18 +0.2 2,724,507 - CA264_11690 0.18 +0.5 2,724,549 + CA264_11690 0.23 +0.4 2,724,561 + CA264_11690 0.25 +0.2 2,724,562 - CA264_11690 0.25 -0.2 2,724,573 + CA264_11690 0.26 -0.6 2,724,623 - CA264_11690 0.32 +0.2 2,724,681 - CA264_11690 0.38 -0.7 2,724,681 - CA264_11690 0.38 +0.7 2,724,689 + CA264_11690 0.39 -0.3 2,724,689 + CA264_11690 0.39 -1.5 2,724,750 + CA264_11690 0.46 -0.1 2,724,782 - CA264_11690 0.50 +0.1 2,724,841 - CA264_11690 0.56 +0.0 2,724,882 + CA264_11690 0.61 +0.4 2,724,961 - CA264_11690 0.70 -1.0 2,724,968 - CA264_11690 0.71 +0.4 2,725,000 - CA264_11690 0.75 -0.3 2,725,088 - CA264_11690 0.85 -0.3 2,725,129 + CA264_11690 0.89 -0.3 2,725,180 + -1.5 2,725,181 - +0.1 2,725,329 - -2.7 2,725,329 - -0.6 2,725,330 + -0.0 2,725,331 - +0.6
Or see this region's nucleotide sequence