Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11655 and CA264_11660 are separated by 154 nucleotides CA264_11660 and CA264_11665 are separated by 49 nucleotides CA264_11665 and CA264_11670 are separated by 500 nucleotides
CA264_11655: CA264_11655 - hypothetical protein, at 2,719,504 to 2,719,740
_11655
CA264_11660: CA264_11660 - hypothetical protein, at 2,719,895 to 2,720,293
_11660
CA264_11665: CA264_11665 - DDE transposase, at 2,720,343 to 2,721,113
_11665
CA264_11670: CA264_11670 - DNA repair protein, at 2,721,614 to 2,722,084
_11670
Position (kb)
2720
2721
2722 Strain fitness (log2 ratio)
-1
0
1
2 at 2719.399 kb on + strand at 2719.412 kb on - strand at 2719.417 kb on - strand at 2719.417 kb on - strand at 2719.420 kb on + strand at 2719.421 kb on - strand at 2719.421 kb on - strand at 2719.421 kb on - strand at 2719.421 kb on - strand at 2719.424 kb on + strand at 2719.429 kb on + strand at 2719.430 kb on - strand at 2719.430 kb on - strand at 2719.430 kb on - strand at 2719.430 kb on - strand at 2719.467 kb on - strand at 2719.624 kb on + strand, within CA264_11655 at 2719.624 kb on + strand, within CA264_11655 at 2720.310 kb on + strand at 2720.327 kb on + strand at 2720.349 kb on - strand at 2720.386 kb on - strand at 2720.585 kb on - strand, within CA264_11665 at 2720.721 kb on + strand, within CA264_11665 at 2720.820 kb on + strand, within CA264_11665 at 2720.821 kb on - strand, within CA264_11665 at 2720.924 kb on - strand, within CA264_11665 at 2720.924 kb on - strand, within CA264_11665 at 2720.926 kb on + strand, within CA264_11665 at 2720.927 kb on - strand, within CA264_11665 at 2720.930 kb on - strand, within CA264_11665 at 2721.113 kb on + strand at 2721.136 kb on - strand at 2721.136 kb on - strand at 2721.193 kb on + strand at 2721.217 kb on + strand at 2721.227 kb on - strand at 2721.272 kb on - strand at 2721.277 kb on + strand at 2721.285 kb on + strand at 2721.286 kb on - strand at 2721.323 kb on + strand at 2721.367 kb on - strand at 2721.370 kb on + strand at 2721.380 kb on + strand at 2721.381 kb on - strand at 2721.402 kb on + strand at 2721.402 kb on + strand at 2721.403 kb on - strand at 2721.404 kb on + strand at 2721.456 kb on - strand at 2721.485 kb on - strand at 2721.628 kb on + strand at 2721.660 kb on + strand at 2721.661 kb on - strand, within CA264_11670 at 2721.709 kb on + strand, within CA264_11670 at 2721.710 kb on - strand, within CA264_11670 at 2721.710 kb on - strand, within CA264_11670 at 2721.728 kb on + strand, within CA264_11670 at 2721.728 kb on + strand, within CA264_11670 at 2721.728 kb on + strand, within CA264_11670 at 2721.729 kb on - strand, within CA264_11670 at 2721.828 kb on - strand, within CA264_11670 at 2721.969 kb on + strand, within CA264_11670 at 2722.006 kb on - strand, within CA264_11670 at 2722.006 kb on - strand, within CA264_11670 at 2722.080 kb on + strand at 2722.081 kb on - strand at 2722.082 kb on + strand at 2722.112 kb on + strand at 2722.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 2,719,399 + -0.1 2,719,412 - +0.2 2,719,417 - +0.1 2,719,417 - +1.3 2,719,420 + +1.0 2,719,421 - -0.1 2,719,421 - +0.6 2,719,421 - +0.3 2,719,421 - -0.5 2,719,424 + +0.5 2,719,429 + -1.0 2,719,430 - -0.2 2,719,430 - -1.0 2,719,430 - +1.1 2,719,430 - -0.6 2,719,467 - -0.2 2,719,624 + CA264_11655 0.51 +1.3 2,719,624 + CA264_11655 0.51 +0.5 2,720,310 + -1.4 2,720,327 + +0.2 2,720,349 - -0.6 2,720,386 - -0.2 2,720,585 - CA264_11665 0.31 -0.3 2,720,721 + CA264_11665 0.49 +1.3 2,720,820 + CA264_11665 0.62 +0.3 2,720,821 - CA264_11665 0.62 +0.5 2,720,924 - CA264_11665 0.75 -0.2 2,720,924 - CA264_11665 0.75 +0.1 2,720,926 + CA264_11665 0.76 +0.4 2,720,927 - CA264_11665 0.76 +0.4 2,720,930 - CA264_11665 0.76 +1.0 2,721,113 + +0.1 2,721,136 - -0.5 2,721,136 - -0.8 2,721,193 + -1.4 2,721,217 + +0.1 2,721,227 - -1.0 2,721,272 - +0.1 2,721,277 + -0.6 2,721,285 + -0.1 2,721,286 - -0.1 2,721,323 + -0.6 2,721,367 - -0.0 2,721,370 + +0.2 2,721,380 + +0.1 2,721,381 - +0.8 2,721,402 + -1.0 2,721,402 + +2.6 2,721,403 - +0.3 2,721,404 + -0.6 2,721,456 - +0.0 2,721,485 - -0.2 2,721,628 + -0.3 2,721,660 + -0.4 2,721,661 - CA264_11670 0.10 -0.1 2,721,709 + CA264_11670 0.20 -0.1 2,721,710 - CA264_11670 0.20 -0.2 2,721,710 - CA264_11670 0.20 -0.8 2,721,728 + CA264_11670 0.24 -0.6 2,721,728 + CA264_11670 0.24 -0.7 2,721,728 + CA264_11670 0.24 +1.0 2,721,729 - CA264_11670 0.24 +0.6 2,721,828 - CA264_11670 0.45 -0.0 2,721,969 + CA264_11670 0.75 -0.2 2,722,006 - CA264_11670 0.83 +0.2 2,722,006 - CA264_11670 0.83 -0.1 2,722,080 + -0.0 2,722,081 - -0.2 2,722,082 + +1.0 2,722,112 + -0.2 2,722,112 + -0.1
Or see this region's nucleotide sequence