Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11655 and CA264_11660 are separated by 154 nucleotides CA264_11660 and CA264_11665 are separated by 49 nucleotides
CA264_11655: CA264_11655 - hypothetical protein, at 2,719,504 to 2,719,740
_11655
CA264_11660: CA264_11660 - hypothetical protein, at 2,719,895 to 2,720,293
_11660
CA264_11665: CA264_11665 - DDE transposase, at 2,720,343 to 2,721,113
_11665
Position (kb)
2719
2720
2721 Strain fitness (log2 ratio)
-2
-1
0
1 at 2718.927 kb on - strand at 2718.940 kb on + strand at 2719.002 kb on + strand at 2719.003 kb on - strand at 2719.023 kb on - strand at 2719.023 kb on - strand at 2719.026 kb on - strand at 2719.052 kb on + strand at 2719.053 kb on - strand at 2719.053 kb on - strand at 2719.053 kb on - strand at 2719.056 kb on - strand at 2719.075 kb on - strand at 2719.075 kb on - strand at 2719.109 kb on + strand at 2719.109 kb on + strand at 2719.120 kb on - strand at 2719.120 kb on - strand at 2719.156 kb on + strand at 2719.157 kb on - strand at 2719.216 kb on - strand at 2719.216 kb on - strand at 2719.219 kb on - strand at 2719.319 kb on - strand at 2719.399 kb on + strand at 2719.412 kb on - strand at 2719.417 kb on - strand at 2719.417 kb on - strand at 2719.420 kb on + strand at 2719.421 kb on - strand at 2719.421 kb on - strand at 2719.421 kb on - strand at 2719.421 kb on - strand at 2719.424 kb on + strand at 2719.429 kb on + strand at 2719.430 kb on - strand at 2719.430 kb on - strand at 2719.430 kb on - strand at 2719.430 kb on - strand at 2719.467 kb on - strand at 2719.624 kb on + strand, within CA264_11655 at 2719.624 kb on + strand, within CA264_11655 at 2720.310 kb on + strand at 2720.327 kb on + strand at 2720.349 kb on - strand at 2720.386 kb on - strand at 2720.585 kb on - strand, within CA264_11665 at 2720.721 kb on + strand, within CA264_11665 at 2720.820 kb on + strand, within CA264_11665 at 2720.821 kb on - strand, within CA264_11665 at 2720.924 kb on - strand, within CA264_11665 at 2720.924 kb on - strand, within CA264_11665 at 2720.926 kb on + strand, within CA264_11665 at 2720.927 kb on - strand, within CA264_11665 at 2720.930 kb on - strand, within CA264_11665 at 2721.113 kb on + strand at 2721.136 kb on - strand at 2721.136 kb on - strand at 2721.193 kb on + strand at 2721.217 kb on + strand at 2721.227 kb on - strand at 2721.272 kb on - strand at 2721.277 kb on + strand at 2721.285 kb on + strand at 2721.286 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 2,718,927 - +0.9 2,718,940 + -1.0 2,719,002 + +0.2 2,719,003 - -0.5 2,719,023 - -0.3 2,719,023 - +1.0 2,719,026 - -0.3 2,719,052 + +0.0 2,719,053 - -0.2 2,719,053 - -0.0 2,719,053 - +0.1 2,719,056 - +0.5 2,719,075 - +1.4 2,719,075 - +1.0 2,719,109 + +1.0 2,719,109 + +0.3 2,719,120 - -0.6 2,719,120 - -0.6 2,719,156 + -2.0 2,719,157 - -0.3 2,719,216 - +0.2 2,719,216 - -0.5 2,719,219 - -0.3 2,719,319 - -0.3 2,719,399 + -0.1 2,719,412 - +0.2 2,719,417 - +0.1 2,719,417 - +1.3 2,719,420 + +1.0 2,719,421 - -0.1 2,719,421 - +0.6 2,719,421 - +0.3 2,719,421 - -0.5 2,719,424 + +0.5 2,719,429 + -1.0 2,719,430 - -0.2 2,719,430 - -1.0 2,719,430 - +1.1 2,719,430 - -0.6 2,719,467 - -0.2 2,719,624 + CA264_11655 0.51 +1.3 2,719,624 + CA264_11655 0.51 +0.5 2,720,310 + -1.4 2,720,327 + +0.2 2,720,349 - -0.6 2,720,386 - -0.2 2,720,585 - CA264_11665 0.31 -0.3 2,720,721 + CA264_11665 0.49 +1.3 2,720,820 + CA264_11665 0.62 +0.3 2,720,821 - CA264_11665 0.62 +0.5 2,720,924 - CA264_11665 0.75 -0.2 2,720,924 - CA264_11665 0.75 +0.1 2,720,926 + CA264_11665 0.76 +0.4 2,720,927 - CA264_11665 0.76 +0.4 2,720,930 - CA264_11665 0.76 +1.0 2,721,113 + +0.1 2,721,136 - -0.5 2,721,136 - -0.8 2,721,193 + -1.4 2,721,217 + +0.1 2,721,227 - -1.0 2,721,272 - +0.1 2,721,277 + -0.6 2,721,285 + -0.1 2,721,286 - -0.1
Or see this region's nucleotide sequence