Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11125 and CA264_11130 are separated by 257 nucleotides CA264_11130 and CA264_11135 are separated by 31 nucleotides CA264_11135 and CA264_11140 are separated by 266 nucleotides
CA264_11125: CA264_11125 - bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase, at 2,568,112 to 2,570,328
_11125
CA264_11130: CA264_11130 - mechanosensitive ion channel protein MscS, at 2,570,586 to 2,571,674
_11130
CA264_11135: CA264_11135 - DUF2179 domain-containing protein, at 2,571,706 to 2,572,305
_11135
CA264_11140: CA264_11140 - 1,4-alpha-glucan branching enzyme, at 2,572,572 to 2,574,899
_11140
Position (kb)
2570
2571
2572 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2569.608 kb on - strand, within CA264_11125 at 2569.616 kb on + strand, within CA264_11125 at 2569.739 kb on + strand, within CA264_11125 at 2569.739 kb on + strand, within CA264_11125 at 2569.754 kb on - strand, within CA264_11125 at 2569.820 kb on + strand, within CA264_11125 at 2569.820 kb on + strand, within CA264_11125 at 2570.031 kb on - strand, within CA264_11125 at 2570.031 kb on - strand, within CA264_11125 at 2570.031 kb on - strand, within CA264_11125 at 2570.083 kb on + strand, within CA264_11125 at 2570.084 kb on - strand, within CA264_11125 at 2570.195 kb on - strand at 2570.214 kb on - strand at 2570.256 kb on + strand at 2570.256 kb on + strand at 2570.257 kb on - strand at 2570.258 kb on + strand at 2570.296 kb on + strand at 2570.297 kb on - strand at 2570.449 kb on - strand at 2570.453 kb on - strand at 2570.453 kb on - strand at 2570.476 kb on - strand at 2570.476 kb on - strand at 2570.491 kb on - strand at 2570.599 kb on + strand at 2570.665 kb on + strand at 2570.675 kb on - strand at 2570.679 kb on - strand at 2570.679 kb on - strand at 2570.801 kb on + strand, within CA264_11130 at 2570.824 kb on - strand, within CA264_11130 at 2570.877 kb on - strand, within CA264_11130 at 2570.877 kb on - strand, within CA264_11130 at 2570.936 kb on + strand, within CA264_11130 at 2570.936 kb on + strand, within CA264_11130 at 2570.937 kb on - strand, within CA264_11130 at 2570.952 kb on - strand, within CA264_11130 at 2570.965 kb on + strand, within CA264_11130 at 2570.965 kb on + strand, within CA264_11130 at 2570.966 kb on - strand, within CA264_11130 at 2570.966 kb on - strand, within CA264_11130 at 2571.012 kb on - strand, within CA264_11130 at 2571.021 kb on - strand, within CA264_11130 at 2571.021 kb on - strand, within CA264_11130 at 2571.033 kb on - strand, within CA264_11130 at 2571.121 kb on + strand, within CA264_11130 at 2571.124 kb on + strand, within CA264_11130 at 2571.258 kb on + strand, within CA264_11130 at 2571.258 kb on + strand, within CA264_11130 at 2571.259 kb on - strand, within CA264_11130 at 2571.309 kb on + strand, within CA264_11130 at 2571.310 kb on - strand, within CA264_11130 at 2571.372 kb on + strand, within CA264_11130 at 2571.373 kb on - strand, within CA264_11130 at 2571.373 kb on - strand, within CA264_11130 at 2571.373 kb on - strand, within CA264_11130 at 2571.388 kb on - strand, within CA264_11130 at 2571.438 kb on - strand, within CA264_11130 at 2571.566 kb on - strand at 2571.613 kb on + strand at 2571.618 kb on - strand at 2571.699 kb on - strand at 2571.928 kb on + strand at 2571.928 kb on + strand, within CA264_11135 at 2571.929 kb on - strand, within CA264_11135 at 2572.021 kb on - strand, within CA264_11135 at 2572.116 kb on + strand, within CA264_11135 at 2572.264 kb on - strand at 2572.264 kb on - strand at 2572.303 kb on + strand at 2572.304 kb on - strand at 2572.304 kb on - strand at 2572.354 kb on - strand at 2572.368 kb on + strand at 2572.386 kb on + strand at 2572.387 kb on - strand at 2572.391 kb on - strand at 2572.392 kb on + strand at 2572.392 kb on + strand at 2572.392 kb on + strand at 2572.393 kb on - strand at 2572.393 kb on - strand at 2572.393 kb on - strand at 2572.448 kb on + strand at 2572.478 kb on + strand at 2572.485 kb on + strand at 2572.503 kb on + strand at 2572.506 kb on - strand at 2572.506 kb on - strand at 2572.510 kb on + strand at 2572.511 kb on - strand at 2572.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 2,569,608 - CA264_11125 0.67 +0.5 2,569,616 + CA264_11125 0.68 +2.0 2,569,739 + CA264_11125 0.73 +0.4 2,569,739 + CA264_11125 0.73 -0.4 2,569,754 - CA264_11125 0.74 -0.1 2,569,820 + CA264_11125 0.77 +0.5 2,569,820 + CA264_11125 0.77 +1.0 2,570,031 - CA264_11125 0.87 -0.1 2,570,031 - CA264_11125 0.87 +2.3 2,570,031 - CA264_11125 0.87 -0.7 2,570,083 + CA264_11125 0.89 -0.5 2,570,084 - CA264_11125 0.89 -1.6 2,570,195 - -0.1 2,570,214 - +0.4 2,570,256 + +0.3 2,570,256 + +0.1 2,570,257 - -0.9 2,570,258 + +1.0 2,570,296 + +0.5 2,570,297 - -0.5 2,570,449 - -1.2 2,570,453 - -0.7 2,570,453 - -0.0 2,570,476 - +0.8 2,570,476 - +0.3 2,570,491 - +0.1 2,570,599 + -0.6 2,570,665 + -0.1 2,570,675 - +0.6 2,570,679 - -0.1 2,570,679 - +0.6 2,570,801 + CA264_11130 0.20 +0.1 2,570,824 - CA264_11130 0.22 -1.4 2,570,877 - CA264_11130 0.27 +0.4 2,570,877 - CA264_11130 0.27 -0.2 2,570,936 + CA264_11130 0.32 -0.3 2,570,936 + CA264_11130 0.32 +1.1 2,570,937 - CA264_11130 0.32 -0.3 2,570,952 - CA264_11130 0.34 +0.7 2,570,965 + CA264_11130 0.35 +2.0 2,570,965 + CA264_11130 0.35 -0.3 2,570,966 - CA264_11130 0.35 -1.0 2,570,966 - CA264_11130 0.35 +0.6 2,571,012 - CA264_11130 0.39 +0.0 2,571,021 - CA264_11130 0.40 +0.1 2,571,021 - CA264_11130 0.40 +0.3 2,571,033 - CA264_11130 0.41 +0.6 2,571,121 + CA264_11130 0.49 +0.2 2,571,124 + CA264_11130 0.49 +1.0 2,571,258 + CA264_11130 0.62 +0.4 2,571,258 + CA264_11130 0.62 -0.0 2,571,259 - CA264_11130 0.62 -1.0 2,571,309 + CA264_11130 0.66 +0.3 2,571,310 - CA264_11130 0.66 +0.1 2,571,372 + CA264_11130 0.72 -1.1 2,571,373 - CA264_11130 0.72 -1.0 2,571,373 - CA264_11130 0.72 +0.4 2,571,373 - CA264_11130 0.72 +2.0 2,571,388 - CA264_11130 0.74 +1.0 2,571,438 - CA264_11130 0.78 -0.7 2,571,566 - -0.0 2,571,613 + -0.0 2,571,618 - -1.0 2,571,699 - -0.2 2,571,928 + -1.9 2,571,928 + CA264_11135 0.37 -0.9 2,571,929 - CA264_11135 0.37 -0.1 2,572,021 - CA264_11135 0.53 -0.2 2,572,116 + CA264_11135 0.68 +0.5 2,572,264 - -0.0 2,572,264 - +1.0 2,572,303 + -0.7 2,572,304 - -0.3 2,572,304 - -0.2 2,572,354 - +0.1 2,572,368 + -0.2 2,572,386 + -0.8 2,572,387 - +0.3 2,572,391 - -2.6 2,572,392 + -1.3 2,572,392 + +0.3 2,572,392 + -0.0 2,572,393 - +0.1 2,572,393 - -0.8 2,572,393 - -0.1 2,572,448 + -0.1 2,572,478 + +1.0 2,572,485 + +0.8 2,572,503 + -1.4 2,572,506 - +0.4 2,572,506 - -0.4 2,572,510 + -1.0 2,572,511 - +0.1 2,572,615 - +0.1
Or see this region's nucleotide sequence