Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08685 and CA264_08690 overlap by 1 nucleotides CA264_08690 and CA264_08695 are separated by 144 nucleotides
CA264_08685: CA264_08685 - class I and II aminotransferase, at 2,015,701 to 2,016,789
_08685
CA264_08690: CA264_08690 - dipeptide epimerase, at 2,016,789 to 2,017,802
_08690
CA264_08695: CA264_08695 - peptidase S13, at 2,017,947 to 2,019,260
_08695
Position (kb)
2016
2017
2018 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2015.879 kb on + strand, within CA264_08685 at 2015.880 kb on - strand, within CA264_08685 at 2015.889 kb on + strand, within CA264_08685 at 2015.962 kb on - strand, within CA264_08685 at 2015.962 kb on - strand, within CA264_08685 at 2015.962 kb on - strand, within CA264_08685 at 2016.014 kb on + strand, within CA264_08685 at 2016.026 kb on + strand, within CA264_08685 at 2016.100 kb on + strand, within CA264_08685 at 2016.118 kb on + strand, within CA264_08685 at 2016.154 kb on + strand, within CA264_08685 at 2016.169 kb on - strand, within CA264_08685 at 2016.169 kb on - strand, within CA264_08685 at 2016.171 kb on - strand, within CA264_08685 at 2016.188 kb on + strand, within CA264_08685 at 2016.189 kb on - strand, within CA264_08685 at 2016.190 kb on + strand, within CA264_08685 at 2016.190 kb on + strand, within CA264_08685 at 2016.192 kb on + strand, within CA264_08685 at 2016.192 kb on + strand, within CA264_08685 at 2016.244 kb on + strand, within CA264_08685 at 2016.245 kb on - strand, within CA264_08685 at 2016.250 kb on - strand, within CA264_08685 at 2016.294 kb on - strand, within CA264_08685 at 2016.468 kb on - strand, within CA264_08685 at 2016.629 kb on + strand, within CA264_08685 at 2016.629 kb on + strand, within CA264_08685 at 2016.630 kb on - strand, within CA264_08685 at 2016.630 kb on - strand, within CA264_08685 at 2016.774 kb on - strand at 2016.850 kb on - strand at 2016.850 kb on - strand at 2016.908 kb on - strand, within CA264_08690 at 2016.995 kb on + strand, within CA264_08690 at 2016.996 kb on - strand, within CA264_08690 at 2017.007 kb on + strand, within CA264_08690 at 2017.106 kb on + strand, within CA264_08690 at 2017.148 kb on - strand, within CA264_08690 at 2017.197 kb on - strand, within CA264_08690 at 2017.292 kb on + strand, within CA264_08690 at 2017.292 kb on + strand, within CA264_08690 at 2017.313 kb on + strand, within CA264_08690 at 2017.392 kb on - strand, within CA264_08690 at 2017.433 kb on + strand, within CA264_08690 at 2017.433 kb on + strand, within CA264_08690 at 2017.433 kb on + strand, within CA264_08690 at 2017.433 kb on + strand, within CA264_08690 at 2017.433 kb on + strand, within CA264_08690 at 2017.434 kb on - strand, within CA264_08690 at 2017.434 kb on - strand, within CA264_08690 at 2017.434 kb on - strand, within CA264_08690 at 2017.507 kb on - strand, within CA264_08690 at 2017.542 kb on + strand, within CA264_08690 at 2017.542 kb on + strand, within CA264_08690 at 2017.543 kb on - strand, within CA264_08690 at 2017.543 kb on - strand, within CA264_08690 at 2017.658 kb on - strand, within CA264_08690 at 2017.755 kb on - strand at 2017.755 kb on - strand at 2017.760 kb on + strand at 2017.761 kb on - strand at 2017.761 kb on - strand at 2017.810 kb on + strand at 2017.810 kb on + strand at 2017.810 kb on + strand at 2017.811 kb on - strand at 2017.817 kb on - strand at 2017.829 kb on - strand at 2017.837 kb on - strand at 2017.837 kb on - strand at 2017.842 kb on - strand at 2017.842 kb on - strand at 2017.842 kb on - strand at 2017.859 kb on + strand at 2017.860 kb on - strand at 2017.929 kb on - strand at 2017.930 kb on + strand at 2017.943 kb on + strand at 2017.943 kb on + strand at 2017.943 kb on + strand at 2017.943 kb on + strand at 2017.944 kb on - strand at 2017.944 kb on - strand at 2017.949 kb on - strand at 2017.974 kb on - strand at 2018.017 kb on + strand at 2018.017 kb on + strand at 2018.018 kb on - strand at 2018.018 kb on - strand at 2018.024 kb on + strand at 2018.024 kb on + strand at 2018.071 kb on + strand at 2018.140 kb on + strand, within CA264_08695 at 2018.141 kb on - strand, within CA264_08695 at 2018.157 kb on - strand, within CA264_08695 at 2018.335 kb on + strand, within CA264_08695 at 2018.336 kb on - strand, within CA264_08695 at 2018.352 kb on + strand, within CA264_08695 at 2018.535 kb on + strand, within CA264_08695 at 2018.564 kb on + strand, within CA264_08695 at 2018.564 kb on + strand, within CA264_08695 at 2018.565 kb on - strand, within CA264_08695 at 2018.615 kb on + strand, within CA264_08695 at 2018.615 kb on + strand, within CA264_08695 at 2018.616 kb on - strand, within CA264_08695 at 2018.624 kb on + strand, within CA264_08695 at 2018.624 kb on + strand, within CA264_08695 at 2018.682 kb on + strand, within CA264_08695 at 2018.794 kb on + strand, within CA264_08695 at 2018.795 kb on - strand, within CA264_08695 at 2018.797 kb on + strand, within CA264_08695 at 2018.797 kb on + strand, within CA264_08695 at 2018.798 kb on - strand, within CA264_08695
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 2,015,879 + CA264_08685 0.16 -0.1 2,015,880 - CA264_08685 0.16 +0.9 2,015,889 + CA264_08685 0.17 -0.2 2,015,962 - CA264_08685 0.24 -0.2 2,015,962 - CA264_08685 0.24 -0.5 2,015,962 - CA264_08685 0.24 -0.5 2,016,014 + CA264_08685 0.29 -0.2 2,016,026 + CA264_08685 0.30 -1.4 2,016,100 + CA264_08685 0.37 +0.9 2,016,118 + CA264_08685 0.38 -0.3 2,016,154 + CA264_08685 0.42 +0.9 2,016,169 - CA264_08685 0.43 -0.6 2,016,169 - CA264_08685 0.43 +0.9 2,016,171 - CA264_08685 0.43 -1.2 2,016,188 + CA264_08685 0.45 -0.7 2,016,189 - CA264_08685 0.45 +0.0 2,016,190 + CA264_08685 0.45 -0.9 2,016,190 + CA264_08685 0.45 -0.6 2,016,192 + CA264_08685 0.45 -1.1 2,016,192 + CA264_08685 0.45 +0.2 2,016,244 + CA264_08685 0.50 -0.1 2,016,245 - CA264_08685 0.50 -0.7 2,016,250 - CA264_08685 0.50 -0.7 2,016,294 - CA264_08685 0.54 -0.7 2,016,468 - CA264_08685 0.70 +0.1 2,016,629 + CA264_08685 0.85 +0.3 2,016,629 + CA264_08685 0.85 +0.9 2,016,630 - CA264_08685 0.85 -0.7 2,016,630 - CA264_08685 0.85 +0.4 2,016,774 - -0.1 2,016,850 - -0.6 2,016,850 - +0.8 2,016,908 - CA264_08690 0.12 -0.2 2,016,995 + CA264_08690 0.20 +0.2 2,016,996 - CA264_08690 0.20 -0.1 2,017,007 + CA264_08690 0.21 +0.2 2,017,106 + CA264_08690 0.31 -0.4 2,017,148 - CA264_08690 0.35 +0.7 2,017,197 - CA264_08690 0.40 -0.1 2,017,292 + CA264_08690 0.50 -0.7 2,017,292 + CA264_08690 0.50 -0.4 2,017,313 + CA264_08690 0.52 +0.9 2,017,392 - CA264_08690 0.59 -1.9 2,017,433 + CA264_08690 0.64 +0.2 2,017,433 + CA264_08690 0.64 +0.2 2,017,433 + CA264_08690 0.64 -0.6 2,017,433 + CA264_08690 0.64 -1.3 2,017,433 + CA264_08690 0.64 -0.7 2,017,434 - CA264_08690 0.64 -0.1 2,017,434 - CA264_08690 0.64 +0.2 2,017,434 - CA264_08690 0.64 +0.6 2,017,507 - CA264_08690 0.71 +0.2 2,017,542 + CA264_08690 0.74 -0.2 2,017,542 + CA264_08690 0.74 -0.9 2,017,543 - CA264_08690 0.74 +0.6 2,017,543 - CA264_08690 0.74 +0.1 2,017,658 - CA264_08690 0.86 +1.1 2,017,755 - -0.5 2,017,755 - +0.6 2,017,760 + -0.3 2,017,761 - +0.9 2,017,761 - +1.4 2,017,810 + -0.8 2,017,810 + -0.3 2,017,810 + -0.8 2,017,811 - +0.9 2,017,817 - -0.0 2,017,829 - +0.9 2,017,837 - +0.7 2,017,837 - -1.0 2,017,842 - +1.5 2,017,842 - -0.7 2,017,842 - +1.4 2,017,859 + +0.2 2,017,860 - +0.4 2,017,929 - +1.6 2,017,930 + -0.5 2,017,943 + +2.7 2,017,943 + +1.9 2,017,943 + -0.8 2,017,943 + +1.9 2,017,944 - +1.1 2,017,944 - +0.9 2,017,949 - +1.3 2,017,974 - +0.5 2,018,017 + +0.1 2,018,017 + -0.1 2,018,018 - +1.5 2,018,018 - -1.7 2,018,024 + +0.6 2,018,024 + +2.5 2,018,071 + +1.1 2,018,140 + CA264_08695 0.15 +0.9 2,018,141 - CA264_08695 0.15 +0.3 2,018,157 - CA264_08695 0.16 +0.9 2,018,335 + CA264_08695 0.30 +0.4 2,018,336 - CA264_08695 0.30 +1.6 2,018,352 + CA264_08695 0.31 +0.5 2,018,535 + CA264_08695 0.45 +0.2 2,018,564 + CA264_08695 0.47 -0.7 2,018,564 + CA264_08695 0.47 +0.6 2,018,565 - CA264_08695 0.47 -0.7 2,018,615 + CA264_08695 0.51 +0.2 2,018,615 + CA264_08695 0.51 -0.1 2,018,616 - CA264_08695 0.51 +1.3 2,018,624 + CA264_08695 0.52 -0.7 2,018,624 + CA264_08695 0.52 +0.7 2,018,682 + CA264_08695 0.56 -0.3 2,018,794 + CA264_08695 0.64 +0.7 2,018,795 - CA264_08695 0.65 +1.4 2,018,797 + CA264_08695 0.65 -1.4 2,018,797 + CA264_08695 0.65 +0.3 2,018,798 - CA264_08695 0.65 +1.4
Or see this region's nucleotide sequence