Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07580 and CA264_07585 are separated by 160 nucleotides CA264_07585 and CA264_07590 are separated by 99 nucleotides CA264_07590 and CA264_07595 are separated by 34 nucleotides
CA264_07580: CA264_07580 - spermidine synthase, at 1,757,110 to 1,758,417
_07580
CA264_07585: CA264_07585 - hypothetical protein, at 1,758,578 to 1,759,390
_07585
CA264_07590: CA264_07590 - hypothetical protein, at 1,759,490 to 1,760,134
_07590
CA264_07595: CA264_07595 - chemotaxis protein CheA, at 1,760,169 to 1,761,809
_07595
Position (kb)
1758
1759
1760 Strain fitness (log2 ratio)
-2
-1
0
1 at 1757.724 kb on + strand, within CA264_07580 at 1757.807 kb on + strand, within CA264_07580 at 1757.808 kb on - strand, within CA264_07580 at 1757.813 kb on + strand, within CA264_07580 at 1757.813 kb on + strand, within CA264_07580 at 1757.813 kb on + strand, within CA264_07580 at 1757.813 kb on + strand, within CA264_07580 at 1757.814 kb on - strand, within CA264_07580 at 1757.900 kb on + strand, within CA264_07580 at 1757.918 kb on + strand, within CA264_07580 at 1757.918 kb on + strand, within CA264_07580 at 1758.011 kb on - strand, within CA264_07580 at 1758.013 kb on - strand, within CA264_07580 at 1758.018 kb on + strand, within CA264_07580 at 1758.135 kb on - strand, within CA264_07580 at 1758.140 kb on + strand, within CA264_07580 at 1758.140 kb on + strand, within CA264_07580 at 1758.141 kb on - strand, within CA264_07580 at 1758.340 kb on + strand at 1758.341 kb on - strand at 1758.407 kb on - strand at 1758.426 kb on - strand at 1758.427 kb on + strand at 1758.428 kb on - strand at 1758.428 kb on - strand at 1758.474 kb on + strand at 1758.487 kb on - strand at 1758.505 kb on + strand at 1758.505 kb on + strand at 1758.544 kb on + strand at 1758.545 kb on - strand at 1758.615 kb on - strand at 1758.748 kb on + strand, within CA264_07585 at 1758.756 kb on + strand, within CA264_07585 at 1758.757 kb on - strand, within CA264_07585 at 1758.759 kb on + strand, within CA264_07585 at 1758.760 kb on - strand, within CA264_07585 at 1758.852 kb on + strand, within CA264_07585 at 1758.871 kb on + strand, within CA264_07585 at 1758.877 kb on - strand, within CA264_07585 at 1758.935 kb on + strand, within CA264_07585 at 1758.955 kb on + strand, within CA264_07585 at 1759.028 kb on - strand, within CA264_07585 at 1759.071 kb on + strand, within CA264_07585 at 1759.159 kb on + strand, within CA264_07585 at 1759.160 kb on - strand, within CA264_07585 at 1759.273 kb on - strand, within CA264_07585 at 1759.317 kb on - strand at 1759.410 kb on + strand at 1759.410 kb on + strand at 1759.410 kb on + strand at 1759.410 kb on + strand at 1759.411 kb on - strand at 1759.411 kb on - strand at 1759.414 kb on + strand at 1759.415 kb on - strand at 1759.415 kb on - strand at 1759.415 kb on - strand at 1759.466 kb on + strand at 1759.476 kb on + strand at 1759.477 kb on - strand at 1759.477 kb on - strand at 1759.540 kb on + strand at 1759.603 kb on + strand, within CA264_07590 at 1759.604 kb on - strand, within CA264_07590 at 1759.628 kb on + strand, within CA264_07590 at 1759.673 kb on - strand, within CA264_07590 at 1759.691 kb on + strand, within CA264_07590 at 1759.726 kb on - strand, within CA264_07590 at 1759.726 kb on - strand, within CA264_07590 at 1759.729 kb on + strand, within CA264_07590 at 1759.877 kb on - strand, within CA264_07590 at 1759.877 kb on - strand, within CA264_07590 at 1759.877 kb on - strand, within CA264_07590 at 1759.959 kb on + strand, within CA264_07590 at 1759.959 kb on + strand, within CA264_07590 at 1760.024 kb on + strand, within CA264_07590 at 1760.085 kb on - strand at 1760.095 kb on + strand at 1760.095 kb on + strand at 1760.099 kb on - strand at 1760.203 kb on - strand at 1760.211 kb on + strand at 1760.264 kb on - strand at 1760.264 kb on - strand at 1760.267 kb on + strand at 1760.302 kb on - strand at 1760.330 kb on + strand at 1760.331 kb on - strand at 1760.334 kb on + strand, within CA264_07595 at 1760.335 kb on - strand, within CA264_07595 at 1760.335 kb on - strand, within CA264_07595 at 1760.340 kb on + strand, within CA264_07595 at 1760.378 kb on + strand, within CA264_07595 at 1760.379 kb on - strand, within CA264_07595
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 1,757,724 + CA264_07580 0.47 -0.1 1,757,807 + CA264_07580 0.53 +0.3 1,757,808 - CA264_07580 0.53 +0.9 1,757,813 + CA264_07580 0.54 +1.6 1,757,813 + CA264_07580 0.54 +0.0 1,757,813 + CA264_07580 0.54 -0.4 1,757,813 + CA264_07580 0.54 +0.9 1,757,814 - CA264_07580 0.54 -0.8 1,757,900 + CA264_07580 0.60 -0.1 1,757,918 + CA264_07580 0.62 -0.1 1,757,918 + CA264_07580 0.62 -0.7 1,758,011 - CA264_07580 0.69 +0.1 1,758,013 - CA264_07580 0.69 -0.4 1,758,018 + CA264_07580 0.69 +1.1 1,758,135 - CA264_07580 0.78 +0.0 1,758,140 + CA264_07580 0.79 -0.9 1,758,140 + CA264_07580 0.79 -1.8 1,758,141 - CA264_07580 0.79 -0.5 1,758,340 + -0.7 1,758,341 - +0.7 1,758,407 - -0.4 1,758,426 - +0.4 1,758,427 + +1.7 1,758,428 - +0.7 1,758,428 - -0.1 1,758,474 + +0.6 1,758,487 - +0.4 1,758,505 + +0.2 1,758,505 + +0.0 1,758,544 + -0.4 1,758,545 - -0.1 1,758,615 - +0.3 1,758,748 + CA264_07585 0.21 -0.1 1,758,756 + CA264_07585 0.22 +0.5 1,758,757 - CA264_07585 0.22 -0.2 1,758,759 + CA264_07585 0.22 -1.2 1,758,760 - CA264_07585 0.22 -0.1 1,758,852 + CA264_07585 0.34 -0.0 1,758,871 + CA264_07585 0.36 -0.1 1,758,877 - CA264_07585 0.37 -0.5 1,758,935 + CA264_07585 0.44 -2.1 1,758,955 + CA264_07585 0.46 +0.1 1,759,028 - CA264_07585 0.55 +0.1 1,759,071 + CA264_07585 0.61 -0.8 1,759,159 + CA264_07585 0.71 +0.6 1,759,160 - CA264_07585 0.72 -0.2 1,759,273 - CA264_07585 0.85 -0.4 1,759,317 - -0.9 1,759,410 + -0.2 1,759,410 + +0.1 1,759,410 + -0.5 1,759,410 + +0.5 1,759,411 - -0.7 1,759,411 - -0.8 1,759,414 + -1.8 1,759,415 - -1.0 1,759,415 - -0.4 1,759,415 - -0.5 1,759,466 + +0.9 1,759,476 + +0.1 1,759,477 - -0.9 1,759,477 - -0.3 1,759,540 + -0.2 1,759,603 + CA264_07590 0.18 +0.3 1,759,604 - CA264_07590 0.18 +1.6 1,759,628 + CA264_07590 0.21 -0.2 1,759,673 - CA264_07590 0.28 -0.7 1,759,691 + CA264_07590 0.31 -0.5 1,759,726 - CA264_07590 0.37 -1.5 1,759,726 - CA264_07590 0.37 +0.5 1,759,729 + CA264_07590 0.37 +0.4 1,759,877 - CA264_07590 0.60 -0.8 1,759,877 - CA264_07590 0.60 -0.9 1,759,877 - CA264_07590 0.60 -0.4 1,759,959 + CA264_07590 0.73 -0.1 1,759,959 + CA264_07590 0.73 -0.3 1,760,024 + CA264_07590 0.83 -0.7 1,760,085 - +1.5 1,760,095 + -0.4 1,760,095 + +0.1 1,760,099 - -0.9 1,760,203 - +0.1 1,760,211 + +0.8 1,760,264 - +0.3 1,760,264 - +0.3 1,760,267 + +0.0 1,760,302 - +1.5 1,760,330 + +0.9 1,760,331 - -0.3 1,760,334 + CA264_07595 0.10 -0.7 1,760,335 - CA264_07595 0.10 -0.5 1,760,335 - CA264_07595 0.10 +1.5 1,760,340 + CA264_07595 0.10 +0.9 1,760,378 + CA264_07595 0.13 +0.7 1,760,379 - CA264_07595 0.13 +0.9
Or see this region's nucleotide sequence