Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06510 and CA264_06515 are separated by 39 nucleotides CA264_06515 and CA264_06520 are separated by 64 nucleotides CA264_06520 and CA264_06525 overlap by 11 nucleotides
CA264_06510: CA264_06510 - trehalose synthase, at 1,503,884 to 1,505,533
_06510
CA264_06515: CA264_06515 - transcription elongation factor GreAB, at 1,505,573 to 1,506,091
_06515
CA264_06520: CA264_06520 - DUF4440 domain-containing protein, at 1,506,156 to 1,506,605
_06520
CA264_06525: CA264_06525 - monofunctional biosynthetic peptidoglycan transglycosylase, at 1,506,595 to 1,507,329
_06525
Position (kb)
1505
1506
1507 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1504.688 kb on + strand, within CA264_06510 at 1504.689 kb on - strand, within CA264_06510 at 1504.701 kb on - strand, within CA264_06510 at 1504.701 kb on - strand, within CA264_06510 at 1504.701 kb on - strand, within CA264_06510 at 1504.701 kb on - strand, within CA264_06510 at 1504.858 kb on - strand, within CA264_06510 at 1504.883 kb on + strand, within CA264_06510 at 1504.884 kb on - strand, within CA264_06510 at 1504.961 kb on + strand, within CA264_06510 at 1504.963 kb on + strand, within CA264_06510 at 1504.964 kb on - strand, within CA264_06510 at 1504.969 kb on + strand, within CA264_06510 at 1504.970 kb on - strand, within CA264_06510 at 1504.970 kb on - strand, within CA264_06510 at 1505.069 kb on - strand, within CA264_06510 at 1505.086 kb on + strand, within CA264_06510 at 1505.087 kb on - strand, within CA264_06510 at 1505.250 kb on + strand, within CA264_06510 at 1505.251 kb on - strand, within CA264_06510 at 1505.251 kb on - strand, within CA264_06510 at 1505.284 kb on + strand, within CA264_06510 at 1505.285 kb on - strand, within CA264_06510 at 1505.296 kb on - strand, within CA264_06510 at 1505.296 kb on - strand, within CA264_06510 at 1505.296 kb on - strand, within CA264_06510 at 1505.309 kb on + strand, within CA264_06510 at 1505.309 kb on + strand, within CA264_06510 at 1505.421 kb on + strand at 1505.421 kb on + strand at 1505.422 kb on - strand at 1505.427 kb on - strand at 1505.427 kb on - strand at 1505.427 kb on - strand at 1505.427 kb on - strand at 1505.432 kb on - strand at 1505.509 kb on - strand at 1505.509 kb on - strand at 1505.509 kb on - strand at 1505.532 kb on - strand at 1505.562 kb on + strand at 1505.562 kb on + strand at 1505.564 kb on + strand at 1505.661 kb on - strand, within CA264_06515 at 1505.661 kb on - strand, within CA264_06515 at 1505.774 kb on - strand, within CA264_06515 at 1505.774 kb on - strand, within CA264_06515 at 1505.774 kb on - strand, within CA264_06515 at 1505.793 kb on + strand, within CA264_06515 at 1505.794 kb on - strand, within CA264_06515 at 1505.814 kb on + strand, within CA264_06515 at 1505.814 kb on + strand, within CA264_06515 at 1505.815 kb on - strand, within CA264_06515 at 1505.863 kb on - strand, within CA264_06515 at 1505.881 kb on + strand, within CA264_06515 at 1505.881 kb on + strand, within CA264_06515 at 1505.881 kb on + strand, within CA264_06515 at 1505.882 kb on - strand, within CA264_06515 at 1505.934 kb on + strand, within CA264_06515 at 1505.982 kb on + strand, within CA264_06515 at 1506.072 kb on + strand at 1506.073 kb on - strand at 1506.106 kb on - strand at 1506.111 kb on + strand at 1506.112 kb on - strand at 1506.150 kb on + strand at 1506.152 kb on + strand at 1506.304 kb on - strand, within CA264_06520 at 1506.335 kb on + strand, within CA264_06520 at 1506.335 kb on + strand, within CA264_06520 at 1506.363 kb on - strand, within CA264_06520 at 1506.364 kb on + strand, within CA264_06520 at 1506.364 kb on + strand, within CA264_06520 at 1506.364 kb on + strand, within CA264_06520 at 1506.365 kb on - strand, within CA264_06520 at 1506.365 kb on - strand, within CA264_06520 at 1506.391 kb on + strand, within CA264_06520 at 1506.451 kb on + strand, within CA264_06520 at 1506.528 kb on + strand, within CA264_06520 at 1506.529 kb on - strand, within CA264_06520 at 1506.571 kb on - strand at 1506.571 kb on - strand at 1506.589 kb on + strand at 1506.589 kb on + strand at 1506.633 kb on - strand at 1506.633 kb on - strand at 1506.633 kb on - strand at 1506.745 kb on + strand, within CA264_06525 at 1506.794 kb on + strand, within CA264_06525 at 1506.794 kb on - strand, within CA264_06525 at 1506.795 kb on - strand, within CA264_06525 at 1506.854 kb on + strand, within CA264_06525 at 1506.854 kb on + strand, within CA264_06525 at 1506.856 kb on + strand, within CA264_06525 at 1506.856 kb on + strand, within CA264_06525 at 1506.856 kb on + strand, within CA264_06525 at 1506.856 kb on + strand, within CA264_06525 at 1506.857 kb on - strand, within CA264_06525 at 1506.903 kb on + strand, within CA264_06525 at 1506.904 kb on - strand, within CA264_06525 at 1506.904 kb on - strand, within CA264_06525 at 1506.932 kb on + strand, within CA264_06525 at 1506.933 kb on - strand, within CA264_06525 at 1506.999 kb on + strand, within CA264_06525 at 1507.038 kb on + strand, within CA264_06525 at 1507.038 kb on + strand, within CA264_06525
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 1,504,688 + CA264_06510 0.49 -0.8 1,504,689 - CA264_06510 0.49 -1.6 1,504,701 - CA264_06510 0.50 -0.1 1,504,701 - CA264_06510 0.50 +0.2 1,504,701 - CA264_06510 0.50 +0.5 1,504,701 - CA264_06510 0.50 -0.3 1,504,858 - CA264_06510 0.59 -0.4 1,504,883 + CA264_06510 0.61 +0.1 1,504,884 - CA264_06510 0.61 -0.3 1,504,961 + CA264_06510 0.65 -0.0 1,504,963 + CA264_06510 0.65 +0.1 1,504,964 - CA264_06510 0.65 +0.5 1,504,969 + CA264_06510 0.66 +0.2 1,504,970 - CA264_06510 0.66 +1.5 1,504,970 - CA264_06510 0.66 -0.1 1,505,069 - CA264_06510 0.72 +0.3 1,505,086 + CA264_06510 0.73 +0.3 1,505,087 - CA264_06510 0.73 +0.2 1,505,250 + CA264_06510 0.83 +0.1 1,505,251 - CA264_06510 0.83 -0.8 1,505,251 - CA264_06510 0.83 -2.0 1,505,284 + CA264_06510 0.85 +0.0 1,505,285 - CA264_06510 0.85 -1.4 1,505,296 - CA264_06510 0.86 -0.2 1,505,296 - CA264_06510 0.86 -0.7 1,505,296 - CA264_06510 0.86 -0.3 1,505,309 + CA264_06510 0.86 -0.9 1,505,309 + CA264_06510 0.86 +0.8 1,505,421 + -0.2 1,505,421 + -0.4 1,505,422 - -0.0 1,505,427 - -2.0 1,505,427 - -0.9 1,505,427 - +0.1 1,505,427 - -0.1 1,505,432 - -0.5 1,505,509 - -1.0 1,505,509 - -0.8 1,505,509 - -0.3 1,505,532 - -0.7 1,505,562 + +0.0 1,505,562 + -0.2 1,505,564 + -0.8 1,505,661 - CA264_06515 0.17 -0.0 1,505,661 - CA264_06515 0.17 +0.0 1,505,774 - CA264_06515 0.39 -0.3 1,505,774 - CA264_06515 0.39 +1.0 1,505,774 - CA264_06515 0.39 +1.3 1,505,793 + CA264_06515 0.42 +0.3 1,505,794 - CA264_06515 0.43 +0.2 1,505,814 + CA264_06515 0.46 -1.0 1,505,814 + CA264_06515 0.46 +0.1 1,505,815 - CA264_06515 0.47 -0.4 1,505,863 - CA264_06515 0.56 -0.8 1,505,881 + CA264_06515 0.59 +0.4 1,505,881 + CA264_06515 0.59 -0.2 1,505,881 + CA264_06515 0.59 +0.0 1,505,882 - CA264_06515 0.60 -0.2 1,505,934 + CA264_06515 0.70 +0.5 1,505,982 + CA264_06515 0.79 -0.6 1,506,072 + +0.5 1,506,073 - -0.3 1,506,106 - -0.6 1,506,111 + -0.3 1,506,112 - -0.3 1,506,150 + -0.9 1,506,152 + -0.4 1,506,304 - CA264_06520 0.33 -0.8 1,506,335 + CA264_06520 0.40 -0.8 1,506,335 + CA264_06520 0.40 -0.4 1,506,363 - CA264_06520 0.46 -0.2 1,506,364 + CA264_06520 0.46 -0.6 1,506,364 + CA264_06520 0.46 +0.3 1,506,364 + CA264_06520 0.46 -0.4 1,506,365 - CA264_06520 0.46 -0.7 1,506,365 - CA264_06520 0.46 -0.9 1,506,391 + CA264_06520 0.52 +1.2 1,506,451 + CA264_06520 0.66 -0.4 1,506,528 + CA264_06520 0.83 +0.2 1,506,529 - CA264_06520 0.83 +0.8 1,506,571 - -0.2 1,506,571 - +2.0 1,506,589 + -0.7 1,506,589 + -1.2 1,506,633 - +0.2 1,506,633 - +1.1 1,506,633 - -0.6 1,506,745 + CA264_06525 0.20 -0.1 1,506,794 + CA264_06525 0.27 -0.4 1,506,794 - CA264_06525 0.27 -0.0 1,506,795 - CA264_06525 0.27 -0.1 1,506,854 + CA264_06525 0.35 +1.0 1,506,854 + CA264_06525 0.35 -0.2 1,506,856 + CA264_06525 0.36 -1.3 1,506,856 + CA264_06525 0.36 +1.0 1,506,856 + CA264_06525 0.36 +0.3 1,506,856 + CA264_06525 0.36 +0.3 1,506,857 - CA264_06525 0.36 -0.6 1,506,903 + CA264_06525 0.42 -1.4 1,506,904 - CA264_06525 0.42 -0.6 1,506,904 - CA264_06525 0.42 +1.5 1,506,932 + CA264_06525 0.46 -0.4 1,506,933 - CA264_06525 0.46 +0.3 1,506,999 + CA264_06525 0.55 -0.1 1,507,038 + CA264_06525 0.60 -0.7 1,507,038 + CA264_06525 0.60 +0.4
Or see this region's nucleotide sequence