Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04990 and CA264_04995 are separated by 150 nucleotides CA264_04995 and CA264_05000 are separated by 107 nucleotides CA264_05000 and CA264_05005 are separated by 15 nucleotides
CA264_04990: CA264_04990 - T9SS C-terminal target domain-containing protein, at 1,158,188 to 1,159,852
_04990
CA264_04995: CA264_04995 - hypothetical protein, at 1,160,003 to 1,160,593
_04995
CA264_05000: CA264_05000 - ribulose-phosphate 3-epimerase, at 1,160,701 to 1,161,354
_05000
CA264_05005: CA264_05005 - colicin receptor, at 1,161,370 to 1,163,796
_05005
Position (kb)
1160
1161 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1159.026 kb on - strand, within CA264_04990 at 1159.071 kb on - strand, within CA264_04990 at 1159.100 kb on + strand, within CA264_04990 at 1159.100 kb on + strand, within CA264_04990 at 1159.101 kb on - strand, within CA264_04990 at 1159.102 kb on + strand, within CA264_04990 at 1159.103 kb on - strand, within CA264_04990 at 1159.103 kb on - strand, within CA264_04990 at 1159.103 kb on - strand, within CA264_04990 at 1159.103 kb on - strand, within CA264_04990 at 1159.103 kb on - strand, within CA264_04990 at 1159.106 kb on + strand, within CA264_04990 at 1159.254 kb on + strand, within CA264_04990 at 1159.330 kb on - strand, within CA264_04990 at 1159.365 kb on - strand, within CA264_04990 at 1159.400 kb on - strand, within CA264_04990 at 1159.469 kb on - strand, within CA264_04990 at 1159.488 kb on + strand, within CA264_04990 at 1159.567 kb on + strand, within CA264_04990 at 1159.568 kb on - strand, within CA264_04990 at 1159.615 kb on + strand, within CA264_04990 at 1159.645 kb on - strand, within CA264_04990 at 1159.687 kb on - strand at 1159.687 kb on - strand at 1159.730 kb on - strand at 1159.730 kb on - strand at 1159.793 kb on + strand at 1159.794 kb on - strand at 1159.796 kb on - strand at 1159.908 kb on + strand at 1159.911 kb on - strand at 1159.926 kb on + strand at 1159.989 kb on + strand at 1159.990 kb on - strand at 1160.031 kb on - strand at 1160.031 kb on - strand at 1160.216 kb on + strand, within CA264_04995 at 1160.219 kb on - strand, within CA264_04995 at 1160.350 kb on + strand, within CA264_04995 at 1160.351 kb on - strand, within CA264_04995 at 1160.390 kb on + strand, within CA264_04995 at 1160.391 kb on - strand, within CA264_04995 at 1160.391 kb on - strand, within CA264_04995 at 1160.436 kb on + strand, within CA264_04995 at 1160.437 kb on - strand, within CA264_04995 at 1160.499 kb on + strand, within CA264_04995 at 1160.565 kb on - strand at 1160.591 kb on + strand at 1160.591 kb on + strand at 1160.635 kb on + strand at 1160.635 kb on + strand at 1160.697 kb on - strand at 1160.697 kb on - strand at 1161.352 kb on + strand at 1161.384 kb on - strand at 1161.402 kb on - strand at 1161.414 kb on - strand at 1161.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 1,159,026 - CA264_04990 0.50 -2.3 1,159,071 - CA264_04990 0.53 +0.7 1,159,100 + CA264_04990 0.55 -0.5 1,159,100 + CA264_04990 0.55 -0.9 1,159,101 - CA264_04990 0.55 +0.4 1,159,102 + CA264_04990 0.55 +0.0 1,159,103 - CA264_04990 0.55 +0.5 1,159,103 - CA264_04990 0.55 +0.3 1,159,103 - CA264_04990 0.55 -0.9 1,159,103 - CA264_04990 0.55 +0.5 1,159,103 - CA264_04990 0.55 -0.3 1,159,106 + CA264_04990 0.55 +0.8 1,159,254 + CA264_04990 0.64 +1.6 1,159,330 - CA264_04990 0.69 -0.3 1,159,365 - CA264_04990 0.71 +0.0 1,159,400 - CA264_04990 0.73 -0.2 1,159,469 - CA264_04990 0.77 +0.0 1,159,488 + CA264_04990 0.78 -0.9 1,159,567 + CA264_04990 0.83 -1.2 1,159,568 - CA264_04990 0.83 +0.9 1,159,615 + CA264_04990 0.86 -1.3 1,159,645 - CA264_04990 0.88 +0.7 1,159,687 - +2.2 1,159,687 - -1.6 1,159,730 - -0.6 1,159,730 - -0.5 1,159,793 + +0.5 1,159,794 - +0.0 1,159,796 - -1.6 1,159,908 + -0.3 1,159,911 - -0.6 1,159,926 + -0.3 1,159,989 + +3.3 1,159,990 - +0.2 1,160,031 - -0.2 1,160,031 - +1.0 1,160,216 + CA264_04995 0.36 -0.3 1,160,219 - CA264_04995 0.37 -0.3 1,160,350 + CA264_04995 0.59 -2.5 1,160,351 - CA264_04995 0.59 -0.7 1,160,390 + CA264_04995 0.65 +0.0 1,160,391 - CA264_04995 0.66 -0.4 1,160,391 - CA264_04995 0.66 -1.2 1,160,436 + CA264_04995 0.73 -0.5 1,160,437 - CA264_04995 0.73 -0.4 1,160,499 + CA264_04995 0.84 +3.0 1,160,565 - -0.7 1,160,591 + -0.4 1,160,591 + -0.3 1,160,635 + +0.0 1,160,635 + -0.3 1,160,697 - -0.1 1,160,697 - +1.6 1,161,352 + -2.0 1,161,384 - +0.3 1,161,402 - -0.6 1,161,414 - +1.2 1,161,550 - +0.0
Or see this region's nucleotide sequence