Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04635 and CA264_04640 overlap by 17 nucleotides CA264_04640 and CA264_04645 are separated by 2 nucleotides CA264_04645 and CA264_04650 are separated by 0 nucleotides
CA264_04635: CA264_04635 - riboflavin biosynthesis protein RibF, at 1,072,938 to 1,073,870
_04635
CA264_04640: CA264_04640 - tRNA pseudouridine(55) synthase, at 1,073,854 to 1,074,552
_04640
CA264_04645: CA264_04645 - UDP-diphosphatase, at 1,074,555 to 1,075,388
_04645
CA264_04650: CA264_04650 - hypothetical protein, at 1,075,389 to 1,075,607
_04650
Position (kb)
1073
1074
1075 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1072.924 kb on + strand at 1072.925 kb on - strand at 1072.940 kb on - strand at 1073.850 kb on + strand at 1073.862 kb on + strand at 1073.862 kb on + strand at 1073.937 kb on + strand, within CA264_04640 at 1073.937 kb on + strand, within CA264_04640 at 1073.937 kb on + strand, within CA264_04640 at 1073.937 kb on + strand, within CA264_04640 at 1073.938 kb on - strand, within CA264_04640 at 1074.022 kb on + strand, within CA264_04640 at 1074.023 kb on - strand, within CA264_04640 at 1074.026 kb on + strand, within CA264_04640 at 1074.026 kb on + strand, within CA264_04640 at 1074.027 kb on - strand, within CA264_04640 at 1074.043 kb on + strand, within CA264_04640 at 1074.043 kb on + strand, within CA264_04640 at 1074.043 kb on + strand, within CA264_04640 at 1074.044 kb on - strand, within CA264_04640 at 1074.046 kb on + strand, within CA264_04640 at 1074.047 kb on - strand, within CA264_04640 at 1074.052 kb on - strand, within CA264_04640 at 1074.052 kb on - strand, within CA264_04640 at 1074.185 kb on + strand, within CA264_04640 at 1074.326 kb on - strand, within CA264_04640 at 1074.326 kb on - strand, within CA264_04640 at 1074.326 kb on - strand, within CA264_04640 at 1074.328 kb on - strand, within CA264_04640 at 1074.328 kb on - strand, within CA264_04640 at 1074.339 kb on - strand, within CA264_04640 at 1074.515 kb on - strand at 1074.515 kb on - strand at 1074.515 kb on - strand at 1074.517 kb on - strand at 1074.517 kb on - strand at 1074.517 kb on - strand at 1074.517 kb on - strand at 1074.517 kb on - strand at 1074.552 kb on + strand at 1074.552 kb on + strand at 1074.552 kb on + strand at 1074.556 kb on + strand at 1074.556 kb on + strand at 1074.557 kb on - strand at 1074.557 kb on - strand at 1075.403 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 1,072,924 + -0.5 1,072,925 - -0.2 1,072,940 - +0.3 1,073,850 + -0.8 1,073,862 + -1.0 1,073,862 + +0.3 1,073,937 + CA264_04640 0.12 +0.1 1,073,937 + CA264_04640 0.12 +1.0 1,073,937 + CA264_04640 0.12 +3.0 1,073,937 + CA264_04640 0.12 +1.0 1,073,938 - CA264_04640 0.12 +0.1 1,074,022 + CA264_04640 0.24 +1.0 1,074,023 - CA264_04640 0.24 -0.9 1,074,026 + CA264_04640 0.25 -0.0 1,074,026 + CA264_04640 0.25 +1.0 1,074,027 - CA264_04640 0.25 +0.3 1,074,043 + CA264_04640 0.27 +1.8 1,074,043 + CA264_04640 0.27 +0.8 1,074,043 + CA264_04640 0.27 +2.0 1,074,044 - CA264_04640 0.27 +1.3 1,074,046 + CA264_04640 0.27 -0.6 1,074,047 - CA264_04640 0.28 +1.0 1,074,052 - CA264_04640 0.28 +0.6 1,074,052 - CA264_04640 0.28 -0.4 1,074,185 + CA264_04640 0.47 +0.1 1,074,326 - CA264_04640 0.68 +1.7 1,074,326 - CA264_04640 0.68 +1.1 1,074,326 - CA264_04640 0.68 -0.8 1,074,328 - CA264_04640 0.68 -0.3 1,074,328 - CA264_04640 0.68 -2.3 1,074,339 - CA264_04640 0.69 -0.6 1,074,515 - +0.1 1,074,515 - +0.4 1,074,515 - +0.6 1,074,517 - -0.2 1,074,517 - +1.0 1,074,517 - +0.3 1,074,517 - +0.9 1,074,517 - +0.2 1,074,552 + +1.0 1,074,552 + -0.1 1,074,552 + +1.1 1,074,556 + -1.0 1,074,556 + +1.2 1,074,557 - +0.8 1,074,557 - -1.3 1,075,403 + -0.2
Or see this region's nucleotide sequence