Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04090 and CA264_04095 are separated by 306 nucleotides CA264_04095 and CA264_04100 are separated by 140 nucleotides CA264_04100 and CA264_04105 are separated by 313 nucleotides
CA264_04090: CA264_04090 - IS3 family transposase, at 948,551 to 949,647
_04090
CA264_04095: CA264_04095 - GAF domain-containing protein, at 949,954 to 950,445
_04095
CA264_04100: CA264_04100 - twin-arginine translocase TatA/TatE family subunit, at 950,586 to 950,798
_04100
CA264_04105: CA264_04105 - hypothetical protein, at 951,112 to 951,660
_04105
Position (kb) 950
951 Strain fitness (log2 ratio) -2
-1
0
1
2 at 949.736 kb on + strand at 949.892 kb on + strand at 949.905 kb on + strand at 949.905 kb on + strand at 949.906 kb on - strand at 949.910 kb on + strand at 949.911 kb on - strand at 949.911 kb on - strand at 949.914 kb on + strand at 949.915 kb on - strand at 949.933 kb on - strand at 949.962 kb on + strand at 950.038 kb on - strand, within CA264_04095 at 950.039 kb on + strand, within CA264_04095 at 950.040 kb on - strand, within CA264_04095 at 950.040 kb on - strand, within CA264_04095 at 950.040 kb on - strand, within CA264_04095 at 950.100 kb on - strand, within CA264_04095 at 950.183 kb on + strand, within CA264_04095 at 950.183 kb on + strand, within CA264_04095 at 950.351 kb on - strand, within CA264_04095 at 950.390 kb on + strand, within CA264_04095 at 950.391 kb on - strand, within CA264_04095 at 950.537 kb on + strand at 950.565 kb on + strand at 950.588 kb on - strand at 950.638 kb on - strand, within CA264_04100 at 950.680 kb on - strand, within CA264_04100 at 950.733 kb on + strand, within CA264_04100 at 950.733 kb on + strand, within CA264_04100 at 950.738 kb on + strand, within CA264_04100 at 950.781 kb on + strand at 950.782 kb on - strand at 950.809 kb on - strand at 950.842 kb on + strand at 950.846 kb on - strand at 950.846 kb on - strand at 950.847 kb on + strand at 950.881 kb on + strand at 950.997 kb on + strand at 950.998 kb on - strand at 951.057 kb on + strand at 951.061 kb on + strand at 951.062 kb on - strand at 951.062 kb on - strand at 951.113 kb on + strand at 951.189 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.311 kb on - strand, within CA264_04105 at 951.311 kb on - strand, within CA264_04105 at 951.405 kb on - strand, within CA264_04105 at 951.447 kb on + strand, within CA264_04105 at 951.479 kb on + strand, within CA264_04105 at 951.533 kb on - strand, within CA264_04105 at 951.540 kb on + strand, within CA264_04105 at 951.540 kb on + strand, within CA264_04105 at 951.541 kb on - strand, within CA264_04105 at 951.541 kb on - strand, within CA264_04105 at 951.570 kb on - strand, within CA264_04105 at 951.619 kb on - strand at 951.619 kb on - strand at 951.630 kb on - strand at 951.660 kb on + strand at 951.660 kb on + strand at 951.675 kb on + strand at 951.746 kb on - strand at 951.769 kb on + strand at 951.774 kb on - strand at 951.775 kb on + strand at 951.789 kb on + strand at 951.790 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 949,736 + -0.4 949,892 + +0.2 949,905 + -0.7 949,905 + +1.0 949,906 - -0.2 949,910 + +2.0 949,911 - -0.0 949,911 - +0.6 949,914 + +0.1 949,915 - -0.4 949,933 - -0.3 949,962 + +0.3 950,038 - CA264_04095 0.17 -0.8 950,039 + CA264_04095 0.17 +0.4 950,040 - CA264_04095 0.17 -0.5 950,040 - CA264_04095 0.17 -0.0 950,040 - CA264_04095 0.17 -0.8 950,100 - CA264_04095 0.30 -0.8 950,183 + CA264_04095 0.47 -2.2 950,183 + CA264_04095 0.47 +0.2 950,351 - CA264_04095 0.81 -0.3 950,390 + CA264_04095 0.89 +0.7 950,391 - CA264_04095 0.89 -0.0 950,537 + -0.8 950,565 + -0.8 950,588 - +0.6 950,638 - CA264_04100 0.24 +1.1 950,680 - CA264_04100 0.44 +1.0 950,733 + CA264_04100 0.69 -0.3 950,733 + CA264_04100 0.69 +0.5 950,738 + CA264_04100 0.71 -0.5 950,781 + -0.3 950,782 - -0.5 950,809 - -2.0 950,842 + -0.4 950,846 - -0.4 950,846 - -0.4 950,847 + -0.1 950,881 + +0.0 950,997 + -0.5 950,998 - +0.8 951,057 + +0.2 951,061 + -0.4 951,062 - +0.1 951,062 - +1.3 951,113 + +0.9 951,189 - CA264_04105 0.14 +0.1 951,226 - CA264_04105 0.21 -0.6 951,226 - CA264_04105 0.21 +1.0 951,226 - CA264_04105 0.21 -0.3 951,226 - CA264_04105 0.21 +0.2 951,311 - CA264_04105 0.36 -0.9 951,311 - CA264_04105 0.36 -1.3 951,405 - CA264_04105 0.53 +1.0 951,447 + CA264_04105 0.61 -0.6 951,479 + CA264_04105 0.67 +0.2 951,533 - CA264_04105 0.77 -1.4 951,540 + CA264_04105 0.78 +0.4 951,540 + CA264_04105 0.78 -0.7 951,541 - CA264_04105 0.78 -0.0 951,541 - CA264_04105 0.78 +0.6 951,570 - CA264_04105 0.83 +0.1 951,619 - +0.5 951,619 - +0.1 951,630 - +2.0 951,660 + -0.1 951,660 + +0.8 951,675 + +1.0 951,746 - -0.4 951,769 + -1.2 951,774 - +1.0 951,775 + +0.9 951,789 + -0.5 951,790 - -0.1
Or see this region's nucleotide sequence