Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02050 and CA264_02055 are separated by 250 nucleotides CA264_02055 and CA264_02060 are separated by 278 nucleotides
CA264_02050: CA264_02050 - anion transporter, at 473,301 to 474,716
_02050
CA264_02055: CA264_02055 - hypothetical protein, at 474,967 to 475,149
_02055
CA264_02060: CA264_02060 - primosomal protein N', at 475,428 to 477,959
_02060
Position (kb) 474
475
476 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 473.992 kb on - strand, within CA264_02050 at 474.015 kb on + strand, within CA264_02050 at 474.015 kb on + strand, within CA264_02050 at 474.016 kb on - strand, within CA264_02050 at 474.084 kb on - strand, within CA264_02050 at 474.128 kb on - strand, within CA264_02050 at 474.155 kb on + strand, within CA264_02050 at 474.256 kb on + strand, within CA264_02050 at 474.272 kb on - strand, within CA264_02050 at 474.272 kb on - strand, within CA264_02050 at 474.277 kb on + strand, within CA264_02050 at 474.278 kb on - strand, within CA264_02050 at 474.372 kb on - strand, within CA264_02050 at 474.382 kb on + strand, within CA264_02050 at 474.389 kb on + strand, within CA264_02050 at 474.448 kb on + strand, within CA264_02050 at 474.557 kb on + strand, within CA264_02050 at 474.557 kb on + strand, within CA264_02050 at 474.557 kb on + strand, within CA264_02050 at 474.558 kb on - strand, within CA264_02050 at 474.558 kb on - strand, within CA264_02050 at 474.558 kb on - strand, within CA264_02050 at 474.561 kb on - strand, within CA264_02050 at 474.679 kb on + strand at 474.702 kb on + strand at 474.702 kb on + strand at 474.702 kb on + strand at 474.703 kb on - strand at 474.703 kb on - strand at 474.703 kb on - strand at 474.715 kb on - strand at 474.951 kb on - strand at 474.986 kb on - strand, within CA264_02055 at 475.058 kb on - strand, within CA264_02055 at 475.148 kb on - strand at 475.241 kb on - strand at 475.243 kb on - strand at 475.246 kb on + strand at 475.247 kb on - strand at 475.247 kb on - strand at 475.373 kb on + strand at 475.374 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 473,992 - CA264_02050 0.49 -0.9 474,015 + CA264_02050 0.50 -0.6 474,015 + CA264_02050 0.50 -1.1 474,016 - CA264_02050 0.50 -0.2 474,084 - CA264_02050 0.55 -1.2 474,128 - CA264_02050 0.58 -1.4 474,155 + CA264_02050 0.60 -0.1 474,256 + CA264_02050 0.67 +0.5 474,272 - CA264_02050 0.69 -0.8 474,272 - CA264_02050 0.69 +0.2 474,277 + CA264_02050 0.69 -1.9 474,278 - CA264_02050 0.69 -2.6 474,372 - CA264_02050 0.76 +0.4 474,382 + CA264_02050 0.76 -0.9 474,389 + CA264_02050 0.77 -0.4 474,448 + CA264_02050 0.81 +0.9 474,557 + CA264_02050 0.89 -0.9 474,557 + CA264_02050 0.89 -0.8 474,557 + CA264_02050 0.89 -0.1 474,558 - CA264_02050 0.89 -0.1 474,558 - CA264_02050 0.89 -0.3 474,558 - CA264_02050 0.89 +0.9 474,561 - CA264_02050 0.89 +0.9 474,679 + -0.8 474,702 + +0.9 474,702 + -0.4 474,702 + -0.3 474,703 - -0.4 474,703 - -0.6 474,703 - +1.3 474,715 - -0.1 474,951 - +0.1 474,986 - CA264_02055 0.10 -2.2 475,058 - CA264_02055 0.50 -2.8 475,148 - -1.1 475,241 - +0.4 475,243 - +0.3 475,246 + -0.0 475,247 - +0.4 475,247 - -0.1 475,373 + +0.4 475,374 - -1.1
Or see this region's nucleotide sequence