Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01705 and CA264_01710 are separated by 195 nucleotides CA264_01710 and CA264_01715 are separated by 62 nucleotides CA264_01715 and CA264_01720 are separated by 93 nucleotides CA264_01720 and CA264_01725 are separated by 2 nucleotides
CA264_01705: CA264_01705 - NADH-quinone oxidoreductase subunit H, at 399,315 to 400,418
_01705
CA264_01710: CA264_01710 - coenzyme A pyrophosphatase, at 400,614 to 401,261
_01710
CA264_01715: CA264_01715 - 4Fe-4S ferredoxin, at 401,324 to 401,926
_01715
CA264_01720: CA264_01720 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6, at 402,020 to 402,547
_01720
CA264_01725: CA264_01725 - NADH-quinone oxidoreductase subunit K, at 402,550 to 402,864
_01725
Position (kb) 401
402 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 400.416 kb on + strand at 400.416 kb on + strand at 400.422 kb on - strand at 400.450 kb on - strand at 400.456 kb on - strand at 400.456 kb on - strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.462 kb on + strand at 400.462 kb on + strand at 400.462 kb on + strand at 400.496 kb on - strand at 400.507 kb on + strand at 400.508 kb on - strand at 400.510 kb on - strand at 400.535 kb on + strand at 400.597 kb on - strand at 400.597 kb on - strand at 400.633 kb on + strand at 400.633 kb on + strand at 400.633 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.660 kb on + strand at 400.757 kb on - strand, within CA264_01710 at 400.785 kb on - strand, within CA264_01710 at 400.849 kb on + strand, within CA264_01710 at 400.849 kb on + strand, within CA264_01710 at 400.925 kb on + strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 401.013 kb on + strand, within CA264_01710 at 401.015 kb on + strand, within CA264_01710 at 401.016 kb on - strand, within CA264_01710 at 401.016 kb on - strand, within CA264_01710 at 401.018 kb on - strand, within CA264_01710 at 401.068 kb on + strand, within CA264_01710 at 401.068 kb on + strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.126 kb on - strand, within CA264_01710 at 401.126 kb on - strand, within CA264_01710 at 401.133 kb on - strand at 401.157 kb on + strand, within CA264_01710 at 401.158 kb on - strand, within CA264_01710 at 401.177 kb on + strand, within CA264_01710 at 401.178 kb on - strand, within CA264_01710 at 401.224 kb on + strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.228 kb on + strand at 401.368 kb on - strand at 401.368 kb on - strand at 401.441 kb on + strand, within CA264_01715 at 401.442 kb on - strand, within CA264_01715 at 401.442 kb on - strand, within CA264_01715 at 401.546 kb on - strand, within CA264_01715 at 401.622 kb on + strand, within CA264_01715 at 401.676 kb on - strand, within CA264_01715 at 401.693 kb on - strand, within CA264_01715 at 402.030 kb on + strand at 402.030 kb on + strand at 402.031 kb on - strand at 402.031 kb on - strand at 402.091 kb on - strand, within CA264_01720 at 402.241 kb on + strand, within CA264_01720 at 402.289 kb on - strand, within CA264_01720 at 402.298 kb on - strand, within CA264_01720 at 402.323 kb on - strand, within CA264_01720 at 402.325 kb on - strand, within CA264_01720 at 402.341 kb on + strand, within CA264_01720 at 402.343 kb on + strand, within CA264_01720 at 402.343 kb on + strand, within CA264_01720 at 402.343 kb on + strand, within CA264_01720 at 402.344 kb on - strand, within CA264_01720 at 402.346 kb on + strand, within CA264_01720 at 402.346 kb on + strand, within CA264_01720 at 402.352 kb on + strand, within CA264_01720 at 402.353 kb on - strand, within CA264_01720 at 402.462 kb on + strand, within CA264_01720 at 402.463 kb on - strand, within CA264_01720 at 402.519 kb on - strand at 402.519 kb on - strand at 402.520 kb on + strand at 402.520 kb on + strand at 402.521 kb on - strand at 402.574 kb on - strand at 402.579 kb on - strand at 402.585 kb on - strand, within CA264_01725 at 402.815 kb on - strand, within CA264_01725 at 402.862 kb on + strand at 402.862 kb on + strand at 402.880 kb on + strand at 402.880 kb on + strand at 402.880 kb on + strand at 402.880 kb on + strand at 402.897 kb on + strand at 402.897 kb on + strand at 402.897 kb on + strand at 402.901 kb on + strand at 402.917 kb on + strand at 402.917 kb on + strand at 402.917 kb on + strand at 402.918 kb on - strand at 402.918 kb on - strand at 402.923 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 400,416 + -0.0 400,416 + +0.5 400,422 - +0.3 400,450 - +0.9 400,456 - -2.2 400,456 - -2.7 400,460 + -0.8 400,460 + -1.0 400,460 + -0.2 400,460 + -0.3 400,461 - +1.7 400,461 - -1.7 400,461 - -1.1 400,461 - +0.4 400,462 + +0.1 400,462 + +1.1 400,462 + +0.2 400,496 - +0.4 400,507 + +1.3 400,508 - -0.7 400,510 - -0.1 400,535 + -0.5 400,597 - +0.0 400,597 - +0.9 400,633 + -0.7 400,633 + -1.7 400,633 + -0.5 400,637 + -0.1 400,637 + +0.0 400,637 + -0.1 400,637 + +0.9 400,660 + +0.1 400,757 - CA264_01710 0.22 -0.3 400,785 - CA264_01710 0.26 -1.3 400,849 + CA264_01710 0.36 -0.3 400,849 + CA264_01710 0.36 -2.4 400,925 + CA264_01710 0.48 -1.3 400,992 - CA264_01710 0.58 -0.1 400,992 - CA264_01710 0.58 -1.0 400,992 - CA264_01710 0.58 -0.7 401,013 + CA264_01710 0.62 -1.1 401,015 + CA264_01710 0.62 -0.2 401,016 - CA264_01710 0.62 +0.7 401,016 - CA264_01710 0.62 -1.1 401,018 - CA264_01710 0.62 -0.2 401,068 + CA264_01710 0.70 -0.1 401,068 + CA264_01710 0.70 +0.6 401,069 - CA264_01710 0.70 +0.1 401,069 - CA264_01710 0.70 +1.7 401,069 - CA264_01710 0.70 -0.1 401,074 + CA264_01710 0.71 -0.8 401,074 + CA264_01710 0.71 -0.2 401,074 + CA264_01710 0.71 -0.7 401,126 - CA264_01710 0.79 -0.4 401,126 - CA264_01710 0.79 -1.1 401,133 - -0.7 401,157 + CA264_01710 0.84 +0.9 401,158 - CA264_01710 0.84 +0.8 401,177 + CA264_01710 0.87 -0.5 401,178 - CA264_01710 0.87 +0.2 401,224 + +0.5 401,225 - +0.8 401,225 - -1.4 401,225 - -2.2 401,228 + -0.9 401,368 - -1.1 401,368 - +0.3 401,441 + CA264_01715 0.19 +2.9 401,442 - CA264_01715 0.20 +1.1 401,442 - CA264_01715 0.20 +1.9 401,546 - CA264_01715 0.37 +1.9 401,622 + CA264_01715 0.49 +1.0 401,676 - CA264_01715 0.58 -0.7 401,693 - CA264_01715 0.61 +1.9 402,030 + -0.2 402,030 + +0.1 402,031 - +0.0 402,031 - -1.2 402,091 - CA264_01720 0.13 +2.2 402,241 + CA264_01720 0.42 +1.5 402,289 - CA264_01720 0.51 +1.9 402,298 - CA264_01720 0.53 +0.9 402,323 - CA264_01720 0.57 +1.5 402,325 - CA264_01720 0.58 +1.5 402,341 + CA264_01720 0.61 +1.4 402,343 + CA264_01720 0.61 +0.6 402,343 + CA264_01720 0.61 +3.4 402,343 + CA264_01720 0.61 +3.4 402,344 - CA264_01720 0.61 +0.5 402,346 + CA264_01720 0.62 +0.9 402,346 + CA264_01720 0.62 +0.3 402,352 + CA264_01720 0.63 +0.9 402,353 - CA264_01720 0.63 +2.0 402,462 + CA264_01720 0.84 +0.4 402,463 - CA264_01720 0.84 +2.5 402,519 - +1.1 402,519 - +1.9 402,520 + -0.1 402,520 + -1.7 402,521 - +1.2 402,574 - +0.1 402,579 - +2.2 402,585 - CA264_01725 0.11 +1.1 402,815 - CA264_01725 0.84 +0.8 402,862 + -0.6 402,862 + -1.7 402,880 + +0.3 402,880 + -0.5 402,880 + -0.7 402,880 + -0.3 402,897 + +0.1 402,897 + +0.3 402,897 + -0.6 402,901 + -0.2 402,917 + -0.5 402,917 + -0.7 402,917 + -0.2 402,918 - +0.4 402,918 - +0.2 402,923 + -0.1
Or see this region's nucleotide sequence