Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01260 and CA264_01265 are separated by 99 nucleotides CA264_01265 and CA264_01270 are separated by 12 nucleotides CA264_01270 and CA264_01275 overlap by 1 nucleotides
CA264_01260: CA264_01260 - hypothetical protein, at 302,424 to 303,404
_01260
CA264_01265: CA264_01265 - 50S ribosomal protein L9, at 303,504 to 303,947
_01265
CA264_01270: CA264_01270 - 30S ribosomal protein S18, at 303,960 to 304,211
_01270
CA264_01275: CA264_01275 - 30S ribosomal protein S6, at 304,211 to 304,579
_01275
Position (kb) 303
304 Strain fitness (log2 ratio) -2
-1
0
1
2 at 302.545 kb on + strand, within CA264_01260 at 302.601 kb on - strand, within CA264_01260 at 302.601 kb on - strand, within CA264_01260 at 302.623 kb on + strand, within CA264_01260 at 302.634 kb on + strand, within CA264_01260 at 302.652 kb on - strand, within CA264_01260 at 302.652 kb on - strand, within CA264_01260 at 302.653 kb on + strand, within CA264_01260 at 302.654 kb on - strand, within CA264_01260 at 302.654 kb on - strand, within CA264_01260 at 302.654 kb on - strand, within CA264_01260 at 302.654 kb on - strand, within CA264_01260 at 302.734 kb on + strand, within CA264_01260 at 302.734 kb on + strand, within CA264_01260 at 302.734 kb on + strand, within CA264_01260 at 302.746 kb on + strand, within CA264_01260 at 302.902 kb on + strand, within CA264_01260 at 302.902 kb on + strand, within CA264_01260 at 302.902 kb on + strand, within CA264_01260 at 302.903 kb on - strand, within CA264_01260 at 302.903 kb on - strand, within CA264_01260 at 303.039 kb on + strand, within CA264_01260 at 303.040 kb on - strand, within CA264_01260 at 303.040 kb on - strand, within CA264_01260 at 303.041 kb on + strand, within CA264_01260 at 303.041 kb on + strand, within CA264_01260 at 303.067 kb on + strand, within CA264_01260 at 303.106 kb on - strand, within CA264_01260 at 303.106 kb on - strand, within CA264_01260 at 303.151 kb on + strand, within CA264_01260 at 303.151 kb on + strand, within CA264_01260 at 303.191 kb on + strand, within CA264_01260 at 303.200 kb on - strand, within CA264_01260 at 303.200 kb on - strand, within CA264_01260 at 303.382 kb on - strand at 303.428 kb on + strand at 303.438 kb on + strand at 303.480 kb on - strand at 303.609 kb on - strand, within CA264_01265 at 303.622 kb on - strand, within CA264_01265 at 304.657 kb on - strand at 304.665 kb on - strand at 304.678 kb on + strand at 304.717 kb on + strand at 304.720 kb on + strand at 304.720 kb on + strand at 304.720 kb on + strand at 304.720 kb on + strand at 304.721 kb on - strand at 304.911 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 302,545 + CA264_01260 0.12 -0.1 302,601 - CA264_01260 0.18 +0.9 302,601 - CA264_01260 0.18 -0.1 302,623 + CA264_01260 0.20 -0.6 302,634 + CA264_01260 0.21 +1.9 302,652 - CA264_01260 0.23 +0.4 302,652 - CA264_01260 0.23 +0.0 302,653 + CA264_01260 0.23 +0.1 302,654 - CA264_01260 0.23 -0.5 302,654 - CA264_01260 0.23 -0.2 302,654 - CA264_01260 0.23 -0.1 302,654 - CA264_01260 0.23 -0.4 302,734 + CA264_01260 0.32 +0.9 302,734 + CA264_01260 0.32 -0.1 302,734 + CA264_01260 0.32 +0.0 302,746 + CA264_01260 0.33 -0.1 302,902 + CA264_01260 0.49 +1.9 302,902 + CA264_01260 0.49 +0.8 302,902 + CA264_01260 0.49 -1.1 302,903 - CA264_01260 0.49 +0.5 302,903 - CA264_01260 0.49 -0.9 303,039 + CA264_01260 0.63 -2.4 303,040 - CA264_01260 0.63 -0.6 303,040 - CA264_01260 0.63 -0.0 303,041 + CA264_01260 0.63 -0.3 303,041 + CA264_01260 0.63 +0.1 303,067 + CA264_01260 0.66 -1.6 303,106 - CA264_01260 0.70 -0.2 303,106 - CA264_01260 0.70 -0.7 303,151 + CA264_01260 0.74 -1.4 303,151 + CA264_01260 0.74 +0.3 303,191 + CA264_01260 0.78 +2.5 303,200 - CA264_01260 0.79 -0.2 303,200 - CA264_01260 0.79 +0.3 303,382 - +0.9 303,428 + +0.9 303,438 + +1.7 303,480 - +0.0 303,609 - CA264_01265 0.24 -0.4 303,622 - CA264_01265 0.27 +0.6 304,657 - -0.5 304,665 - +0.3 304,678 + +0.1 304,717 + +0.6 304,720 + -1.0 304,720 + +0.8 304,720 + -0.1 304,720 + +0.2 304,721 - -0.1 304,911 + +0.0
Or see this region's nucleotide sequence