Experiment: Ponti_ML7_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00045 and CA264_00050 are separated by 221 nucleotides CA264_00050 and CA264_00055 are separated by 69 nucleotides
CA264_00045: CA264_00045 - endopeptidase La, at 11,239 to 13,728
_00045
CA264_00050: CA264_00050 - hypothetical protein, at 13,950 to 14,993
_00050
CA264_00055: CA264_00055 - ATP-dependent protease ATP-binding subunit HslU, at 15,063 to 16,457
_00055
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 12.953 kb on - strand, within CA264_00045 at 12.953 kb on - strand, within CA264_00045 at 13.139 kb on + strand, within CA264_00045 at 13.193 kb on + strand, within CA264_00045 at 13.194 kb on - strand, within CA264_00045 at 13.611 kb on + strand at 13.625 kb on + strand at 13.759 kb on + strand at 13.760 kb on - strand at 13.849 kb on - strand at 13.849 kb on - strand at 13.857 kb on + strand at 13.857 kb on + strand at 13.919 kb on - strand at 13.930 kb on + strand at 13.930 kb on + strand at 13.936 kb on + strand at 13.936 kb on + strand at 13.967 kb on + strand at 13.970 kb on - strand at 13.970 kb on - strand at 13.973 kb on + strand at 13.973 kb on + strand at 13.997 kb on + strand at 14.119 kb on + strand, within CA264_00050 at 14.120 kb on - strand, within CA264_00050 at 14.176 kb on - strand, within CA264_00050 at 14.176 kb on - strand, within CA264_00050 at 14.176 kb on - strand, within CA264_00050 at 14.185 kb on - strand, within CA264_00050 at 14.258 kb on + strand, within CA264_00050 at 14.258 kb on + strand, within CA264_00050 at 14.260 kb on + strand, within CA264_00050 at 14.261 kb on - strand, within CA264_00050 at 14.265 kb on + strand, within CA264_00050 at 14.266 kb on - strand, within CA264_00050 at 14.318 kb on + strand, within CA264_00050 at 14.435 kb on - strand, within CA264_00050 at 14.441 kb on - strand, within CA264_00050 at 14.466 kb on - strand, within CA264_00050 at 14.504 kb on + strand, within CA264_00050 at 14.517 kb on + strand, within CA264_00050 at 14.525 kb on - strand, within CA264_00050 at 14.533 kb on - strand, within CA264_00050 at 14.730 kb on - strand, within CA264_00050 at 14.799 kb on + strand, within CA264_00050 at 14.940 kb on + strand at 14.987 kb on + strand at 14.988 kb on - strand at 14.991 kb on + strand at 14.992 kb on - strand at 15.017 kb on + strand at 15.046 kb on - strand at 15.046 kb on - strand at 15.067 kb on + strand at 15.067 kb on + strand at 15.067 kb on + strand at 15.068 kb on - strand at 15.071 kb on + strand at 15.075 kb on - strand at 15.120 kb on + strand at 15.260 kb on + strand, within CA264_00055 at 15.308 kb on + strand, within CA264_00055 at 15.308 kb on + strand, within CA264_00055 at 15.333 kb on - strand, within CA264_00055 at 15.340 kb on + strand, within CA264_00055 at 15.340 kb on + strand, within CA264_00055 at 15.761 kb on - strand, within CA264_00055 at 15.761 kb on - strand, within CA264_00055 at 15.761 kb on - strand, within CA264_00055 at 15.807 kb on - strand, within CA264_00055 at 15.807 kb on - strand, within CA264_00055
Per-strain Table
Position Strand Gene LocusTag Fraction Ponti_ML7_MIT diversity barseq remove 12,953 - CA264_00045 0.69 +1.2 12,953 - CA264_00045 0.69 -0.0 13,139 + CA264_00045 0.76 +0.7 13,193 + CA264_00045 0.78 +0.3 13,194 - CA264_00045 0.79 +0.4 13,611 + +0.9 13,625 + -0.7 13,759 + +0.3 13,760 - +0.0 13,849 - -1.3 13,849 - +0.5 13,857 + +0.3 13,857 + +0.9 13,919 - +0.4 13,930 + +0.9 13,930 + -0.2 13,936 + -0.5 13,936 + +0.4 13,967 + +0.0 13,970 - +0.1 13,970 - -0.1 13,973 + -1.7 13,973 + -1.1 13,997 + -0.2 14,119 + CA264_00050 0.16 +1.1 14,120 - CA264_00050 0.16 -0.3 14,176 - CA264_00050 0.22 -0.2 14,176 - CA264_00050 0.22 -2.1 14,176 - CA264_00050 0.22 -0.2 14,185 - CA264_00050 0.23 +0.1 14,258 + CA264_00050 0.30 +0.1 14,258 + CA264_00050 0.30 -1.1 14,260 + CA264_00050 0.30 +3.7 14,261 - CA264_00050 0.30 -0.0 14,265 + CA264_00050 0.30 -1.1 14,266 - CA264_00050 0.30 +0.3 14,318 + CA264_00050 0.35 -0.1 14,435 - CA264_00050 0.46 -0.8 14,441 - CA264_00050 0.47 +0.2 14,466 - CA264_00050 0.49 -1.3 14,504 + CA264_00050 0.53 +0.5 14,517 + CA264_00050 0.54 +0.1 14,525 - CA264_00050 0.55 +0.2 14,533 - CA264_00050 0.56 +0.5 14,730 - CA264_00050 0.75 +0.0 14,799 + CA264_00050 0.81 +0.1 14,940 + +1.5 14,987 + -0.1 14,988 - -0.4 14,991 + -1.4 14,992 - -0.6 15,017 + -0.3 15,046 - +0.4 15,046 - +0.6 15,067 + +1.0 15,067 + -0.7 15,067 + +1.9 15,068 - -0.5 15,071 + -0.3 15,075 - -0.4 15,120 + -0.1 15,260 + CA264_00055 0.14 +0.1 15,308 + CA264_00055 0.18 +0.7 15,308 + CA264_00055 0.18 -0.6 15,333 - CA264_00055 0.19 +0.9 15,340 + CA264_00055 0.20 +0.1 15,340 + CA264_00055 0.20 -1.0 15,761 - CA264_00055 0.50 -0.5 15,761 - CA264_00055 0.50 +0.1 15,761 - CA264_00055 0.50 -0.4 15,807 - CA264_00055 0.53 +1.0 15,807 - CA264_00055 0.53 +0.1
Or see this region's nucleotide sequence