Strain Fitness in Escherichia coli BL21 around ECD_t00019

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00702 and ECD_t00015 are separated by 164 nucleotidesECD_t00015 and ECD_t00016 are separated by 135 nucleotidesECD_t00016 and ECD_t00017 are separated by 2 nucleotidesECD_t00017 and ECD_t00018 are separated by 51 nucleotidesECD_t00018 and ECD_t00019 are separated by 3 nucleotidesECD_t00019 and ECD_t00020 are separated by 146 nucleotidesECD_t00020 and ECD_t00021 are separated by 132 nucleotidesECD_t00021 and ECD_00703 are separated by 277 nucleotides ECD_00702: ECD_00702 - periplasmic TolA-binding protein, at 738,259 to 739,050 _00702 ECD_t00015: ECD_t00015 - tRNA-Lys, at 739,215 to 739,290 _t00015 ECD_t00016: ECD_t00016 - tRNA-Val, at 739,426 to 739,501 _t00016 ECD_t00017: ECD_t00017 - tRNA-Lys, at 739,504 to 739,579 _t00017 ECD_t00018: ECD_t00018 - tRNA-Val, at 739,631 to 739,706 _t00018 ECD_t00019: ECD_t00019 - tRNA-Lys, at 739,710 to 739,785 _t00019 ECD_t00020: ECD_t00020 - tRNA-Lys, at 739,932 to 740,007 _t00020 ECD_t00021: ECD_t00021 - tRNA-Lys, at 740,140 to 740,215 _t00021 ECD_00703: ECD_00703 - quinolinate synthase, subunit A, at 740,493 to 741,536 _00703 Position (kb) 739 740Strain fitness (log2 ratio) -1 0 1at 738.790 kb on + strand, within ECD_00702at 738.808 kb on + strand, within ECD_00702at 738.808 kb on + strand, within ECD_00702at 738.829 kb on + strand, within ECD_00702at 738.840 kb on + strand, within ECD_00702at 738.862 kb on + strand, within ECD_00702at 738.875 kb on + strand, within ECD_00702at 738.976 kb on + strandat 738.997 kb on + strandat 738.998 kb on - strandat 739.048 kb on + strandat 739.048 kb on + strandat 739.048 kb on + strandat 739.079 kb on - strandat 739.164 kb on + strandat 739.164 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.397 kb on + strandat 739.401 kb on + strandat 739.401 kb on + strandat 739.401 kb on + strandat 739.401 kb on + strandat 739.401 kb on + strandat 739.401 kb on + strandat 739.401 kb on + strandat 739.407 kb on + strandat 739.407 kb on + strandat 739.407 kb on + strandat 739.407 kb on + strandat 739.419 kb on + strandat 739.419 kb on + strandat 739.539 kb on + strand, within ECD_t00017at 739.581 kb on + strandat 739.585 kb on + strandat 739.585 kb on + strandat 739.585 kb on + strandat 739.585 kb on + strandat 739.605 kb on + strandat 739.605 kb on + strandat 739.612 kb on + strandat 739.612 kb on + strandat 739.612 kb on + strandat 739.745 kb on + strand, within ECD_t00019at 739.809 kb on + strandat 740.128 kb on + strandat 740.412 kb on + strandat 740.500 kb on + strandat 740.613 kb on - strand, within ECD_00703

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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738,790 + ECD_00702 0.67 -0.6
738,808 + ECD_00702 0.69 -0.5
738,808 + ECD_00702 0.69 +0.5
738,829 + ECD_00702 0.72 -0.4
738,840 + ECD_00702 0.73 +0.9
738,862 + ECD_00702 0.76 -1.0
738,875 + ECD_00702 0.78 +0.7
738,976 + -0.8
738,997 + +0.5
738,998 - +0.4
739,048 + +0.4
739,048 + +0.2
739,048 + -0.2
739,079 - -0.5
739,164 + +0.1
739,164 + -0.7
739,397 + -0.2
739,397 + +0.0
739,397 + +0.2
739,397 + +0.1
739,397 + +0.2
739,397 + +0.8
739,397 + +0.3
739,397 + +0.3
739,401 + -0.0
739,401 + +0.0
739,401 + +0.1
739,401 + +0.0
739,401 + -0.0
739,401 + +0.4
739,401 + +0.3
739,407 + +0.1
739,407 + +0.2
739,407 + +0.7
739,407 + -0.1
739,419 + +0.4
739,419 + -0.1
739,539 + ECD_t00017 0.46 -0.1
739,581 + +0.9
739,585 + -0.3
739,585 + -0.2
739,585 + -0.1
739,585 + +0.4
739,605 + +0.3
739,605 + +0.7
739,612 + +0.2
739,612 + +0.5
739,612 + +0.0
739,745 + ECD_t00019 0.46 -0.7
739,809 + +0.5
740,128 + +0.1
740,412 + +0.6
740,500 + -1.1
740,613 - ECD_00703 0.11 +1.1

Or see this region's nucleotide sequence