Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00702 and ECD_t00015 are separated by 164 nucleotides ECD_t00015 and ECD_t00016 are separated by 135 nucleotides ECD_t00016 and ECD_t00017 are separated by 2 nucleotides ECD_t00017 and ECD_t00018 are separated by 51 nucleotides ECD_t00018 and ECD_t00019 are separated by 3 nucleotides ECD_t00019 and ECD_t00020 are separated by 146 nucleotides ECD_t00020 and ECD_t00021 are separated by 132 nucleotides ECD_t00021 and ECD_00703 are separated by 277 nucleotides
ECD_00702: ECD_00702 - periplasmic TolA-binding protein, at 738,259 to 739,050
_00702
ECD_t00015: ECD_t00015 - tRNA-Lys, at 739,215 to 739,290
_t00015
ECD_t00016: ECD_t00016 - tRNA-Val, at 739,426 to 739,501
_t00016
ECD_t00017: ECD_t00017 - tRNA-Lys, at 739,504 to 739,579
_t00017
ECD_t00018: ECD_t00018 - tRNA-Val, at 739,631 to 739,706
_t00018
ECD_t00019: ECD_t00019 - tRNA-Lys, at 739,710 to 739,785
_t00019
ECD_t00020: ECD_t00020 - tRNA-Lys, at 739,932 to 740,007
_t00020
ECD_t00021: ECD_t00021 - tRNA-Lys, at 740,140 to 740,215
_t00021
ECD_00703: ECD_00703 - quinolinate synthase, subunit A, at 740,493 to 741,536
_00703
Position (kb)
739
740 Strain fitness (log2 ratio)
-1
0
1 at 738.790 kb on + strand, within ECD_00702 at 738.808 kb on + strand, within ECD_00702 at 738.808 kb on + strand, within ECD_00702 at 738.829 kb on + strand, within ECD_00702 at 738.840 kb on + strand, within ECD_00702 at 738.862 kb on + strand, within ECD_00702 at 738.875 kb on + strand, within ECD_00702 at 738.976 kb on + strand at 738.997 kb on + strand at 738.998 kb on - strand at 739.048 kb on + strand at 739.048 kb on + strand at 739.048 kb on + strand at 739.079 kb on - strand at 739.164 kb on + strand at 739.164 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.401 kb on + strand at 739.401 kb on + strand at 739.401 kb on + strand at 739.401 kb on + strand at 739.401 kb on + strand at 739.401 kb on + strand at 739.401 kb on + strand at 739.407 kb on + strand at 739.407 kb on + strand at 739.407 kb on + strand at 739.407 kb on + strand at 739.419 kb on + strand at 739.419 kb on + strand at 739.539 kb on + strand, within ECD_t00017 at 739.581 kb on + strand at 739.585 kb on + strand at 739.585 kb on + strand at 739.585 kb on + strand at 739.585 kb on + strand at 739.605 kb on + strand at 739.605 kb on + strand at 739.612 kb on + strand at 739.612 kb on + strand at 739.612 kb on + strand at 739.745 kb on + strand, within ECD_t00019 at 739.809 kb on + strand at 740.128 kb on + strand at 740.412 kb on + strand at 740.500 kb on + strand at 740.613 kb on - strand, within ECD_00703
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 738,790 + ECD_00702 0.67 -0.6 738,808 + ECD_00702 0.69 -0.5 738,808 + ECD_00702 0.69 +0.5 738,829 + ECD_00702 0.72 -0.4 738,840 + ECD_00702 0.73 +0.9 738,862 + ECD_00702 0.76 -1.0 738,875 + ECD_00702 0.78 +0.7 738,976 + -0.8 738,997 + +0.5 738,998 - +0.4 739,048 + +0.4 739,048 + +0.2 739,048 + -0.2 739,079 - -0.5 739,164 + +0.1 739,164 + -0.7 739,397 + -0.2 739,397 + +0.0 739,397 + +0.2 739,397 + +0.1 739,397 + +0.2 739,397 + +0.8 739,397 + +0.3 739,397 + +0.3 739,401 + -0.0 739,401 + +0.0 739,401 + +0.1 739,401 + +0.0 739,401 + -0.0 739,401 + +0.4 739,401 + +0.3 739,407 + +0.1 739,407 + +0.2 739,407 + +0.7 739,407 + -0.1 739,419 + +0.4 739,419 + -0.1 739,539 + ECD_t00017 0.46 -0.1 739,581 + +0.9 739,585 + -0.3 739,585 + -0.2 739,585 + -0.1 739,585 + +0.4 739,605 + +0.3 739,605 + +0.7 739,612 + +0.2 739,612 + +0.5 739,612 + +0.0 739,745 + ECD_t00019 0.46 -0.7 739,809 + +0.5 740,128 + +0.1 740,412 + +0.6 740,500 + -1.1 740,613 - ECD_00703 0.11 +1.1
Or see this region's nucleotide sequence