Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00630 and ECD_t00008 are separated by 153 nucleotides ECD_t00008 and ECD_t00009 are separated by 37 nucleotides ECD_t00009 and ECD_t00010 are separated by 47 nucleotides ECD_t00010 and ECD_t00011 are separated by 15 nucleotides ECD_t00011 and ECD_t00012 are separated by 34 nucleotides ECD_t00012 and ECD_t00013 are separated by 23 nucleotides ECD_t00013 and ECD_t00014 are separated by 8 nucleotides
ECD_00630: ECD_00630 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase, at 654,975 to 656,150
_00630
ECD_t00008: ECD_t00008 - tRNA-Gln, at 656,304 to 656,378
_t00008
ECD_t00009: ECD_t00009 - tRNA-Gln, at 656,416 to 656,490
_t00009
ECD_t00010: ECD_t00010 - tRNA-Met, at 656,538 to 656,614
_t00010
ECD_t00011: ECD_t00011 - tRNA-Gln, at 656,630 to 656,704
_t00011
ECD_t00012: ECD_t00012 - tRNA-Gln, at 656,739 to 656,813
_t00012
ECD_t00013: ECD_t00013 - tRNA-Leu, at 656,837 to 656,921
_t00013
ECD_t00014: ECD_t00014 - tRNA-Met, at 656,930 to 657,006
_t00014
Position (kb) 656
657 Strain fitness (log2 ratio) -1
0
1 at 656.133 kb on + strand at 656.148 kb on + strand at 656.154 kb on + strand at 656.154 kb on + strand at 656.314 kb on - strand, within ECD_t00008 at 656.392 kb on - strand at 656.392 kb on - strand at 656.392 kb on - strand at 656.392 kb on - strand at 656.392 kb on - strand at 656.392 kb on - strand at 656.399 kb on - strand at 656.399 kb on - strand at 656.578 kb on - strand, within ECD_t00010 at 656.640 kb on - strand, within ECD_t00011 at 657.142 kb on - strand at 657.153 kb on - strand at 657.160 kb on - strand at 657.160 kb on - strand at 657.182 kb on + strand at 657.182 kb on + strand at 657.182 kb on + strand at 657.183 kb on - strand at 657.201 kb on + strand at 657.228 kb on + strand at 657.228 kb on + strand at 657.247 kb on + strand at 657.262 kb on + strand at 657.262 kb on + strand at 657.262 kb on + strand at 657.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 656,133 + +0.1 656,148 + -0.0 656,154 + -0.8 656,154 + -0.4 656,314 - ECD_t00008 0.13 +0.2 656,392 - +0.3 656,392 - +0.4 656,392 - +0.0 656,392 - +0.1 656,392 - -0.4 656,392 - -0.3 656,399 - +0.6 656,399 - -0.1 656,578 - ECD_t00010 0.52 -0.3 656,640 - ECD_t00011 0.13 -0.5 657,142 - +1.3 657,153 - -0.1 657,160 - -0.0 657,160 - +0.0 657,182 + +0.4 657,182 + -0.6 657,182 + +0.1 657,183 - +0.1 657,201 + +0.0 657,228 + -0.4 657,228 + -0.0 657,247 + -0.0 657,262 + -0.2 657,262 + -0.4 657,262 + -0.1 657,344 - -1.2
Or see this region's nucleotide sequence