Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_r00009 and ECD_t00060 are separated by 183 nucleotides ECD_t00060 and ECD_t00061 are separated by 42 nucleotides ECD_t00061 and ECD_r00010 are separated by 68 nucleotides ECD_r00010 and ECD_03130 are separated by 473 nucleotides
ECD_r00009: ECD_r00009 - 23S ribosomal RNA, at 3,285,037 to 3,287,944
_r00009
ECD_t00060: ECD_t00060 - tRNA-Ala, at 3,288,128 to 3,288,203
_t00060
ECD_t00061: ECD_t00061 - tRNA-Ile, at 3,288,246 to 3,288,322
_t00061
ECD_r00010: ECD_r00010 - 16S ribosomal RNA, at 3,288,391 to 3,289,932
_r00010
ECD_03130: ECD_03130 - bacterial transferase hexapeptide domain protein, at 3,290,406 to 3,290,960
_03130
Position (kb)
3288
3289
3290 Strain fitness (log2 ratio)
-1
0
1 at 3290.231 kb on - strand at 3290.231 kb on - strand at 3290.338 kb on + strand at 3290.339 kb on - strand at 3290.390 kb on + strand at 3290.405 kb on + strand at 3290.405 kb on + strand at 3290.405 kb on + strand at 3290.405 kb on + strand at 3290.406 kb on - strand at 3290.419 kb on + strand at 3290.551 kb on + strand, within ECD_03130 at 3290.551 kb on + strand, within ECD_03130 at 3290.551 kb on + strand, within ECD_03130 at 3290.551 kb on + strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.560 kb on + strand, within ECD_03130 at 3290.560 kb on + strand, within ECD_03130 at 3290.597 kb on + strand, within ECD_03130 at 3290.597 kb on + strand, within ECD_03130 at 3290.598 kb on - strand, within ECD_03130 at 3290.616 kb on - strand, within ECD_03130 at 3290.626 kb on - strand, within ECD_03130 at 3290.626 kb on - strand, within ECD_03130 at 3290.756 kb on - strand, within ECD_03130 at 3290.758 kb on + strand, within ECD_03130 at 3290.758 kb on + strand, within ECD_03130 at 3290.759 kb on - strand, within ECD_03130 at 3290.759 kb on - strand, within ECD_03130 at 3290.786 kb on + strand, within ECD_03130 at 3290.829 kb on + strand, within ECD_03130 at 3290.830 kb on - strand, within ECD_03130 at 3290.892 kb on + strand, within ECD_03130 at 3290.907 kb on + strand at 3290.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,290,231 - +0.6 3,290,231 - -0.2 3,290,338 + +0.1 3,290,339 - +0.2 3,290,390 + +0.1 3,290,405 + -0.4 3,290,405 + -0.3 3,290,405 + +0.8 3,290,405 + -0.2 3,290,406 - +0.4 3,290,419 + +0.1 3,290,551 + ECD_03130 0.26 -0.1 3,290,551 + ECD_03130 0.26 -0.0 3,290,551 + ECD_03130 0.26 +0.3 3,290,551 + ECD_03130 0.26 +0.9 3,290,552 - ECD_03130 0.26 +0.7 3,290,552 - ECD_03130 0.26 +0.2 3,290,552 - ECD_03130 0.26 -0.4 3,290,552 - ECD_03130 0.26 +0.5 3,290,552 - ECD_03130 0.26 -0.2 3,290,556 + ECD_03130 0.27 +0.0 3,290,556 + ECD_03130 0.27 -1.3 3,290,556 + ECD_03130 0.27 +0.1 3,290,556 + ECD_03130 0.27 -0.5 3,290,556 + ECD_03130 0.27 +0.4 3,290,556 + ECD_03130 0.27 -0.3 3,290,557 - ECD_03130 0.27 +0.1 3,290,557 - ECD_03130 0.27 +0.5 3,290,557 - ECD_03130 0.27 +0.4 3,290,557 - ECD_03130 0.27 +0.1 3,290,560 + ECD_03130 0.28 -0.2 3,290,560 + ECD_03130 0.28 +0.3 3,290,597 + ECD_03130 0.34 +0.2 3,290,597 + ECD_03130 0.34 -0.3 3,290,598 - ECD_03130 0.35 +0.1 3,290,616 - ECD_03130 0.38 +0.5 3,290,626 - ECD_03130 0.40 +0.5 3,290,626 - ECD_03130 0.40 +0.2 3,290,756 - ECD_03130 0.63 -0.2 3,290,758 + ECD_03130 0.63 +0.3 3,290,758 + ECD_03130 0.63 +0.3 3,290,759 - ECD_03130 0.64 -0.2 3,290,759 - ECD_03130 0.64 +1.0 3,290,786 + ECD_03130 0.68 -0.3 3,290,829 + ECD_03130 0.76 -0.1 3,290,830 - ECD_03130 0.76 +0.4 3,290,892 + ECD_03130 0.88 +0.7 3,290,907 + +0.2 3,290,908 - +0.1
Or see this region's nucleotide sequence