Strain Fitness in Escherichia coli BL21 around ECD_04086

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04085 and ECD_04086 are separated by 189 nucleotidesECD_04086 and ECD_04087 overlap by 11 nucleotidesECD_04087 and ECD_04088 are separated by 324 nucleotides ECD_04085: ECD_04085 - 2':3'-cyclic-nucleotide 2'-phosphodiesterase, at 4,347,981 to 4,349,924 _04085 ECD_04086: ECD_04086 - 3'(2'),5'-bisphosphate nucleotidase, at 4,350,114 to 4,350,854 _04086 ECD_04087: ECD_04087 - putative transcriptional regulator, at 4,350,844 to 4,351,401 _04087 ECD_04088: ECD_04088 - DUF1107 family protein, at 4,351,726 to 4,351,932 _04088 Position (kb) 4350 4351Strain fitness (log2 ratio) -3 -2 -1 0 1at 4349.165 kb on + strand, within ECD_04085at 4349.165 kb on + strand, within ECD_04085at 4349.165 kb on + strand, within ECD_04085at 4349.198 kb on - strand, within ECD_04085at 4349.302 kb on + strand, within ECD_04085at 4349.322 kb on - strand, within ECD_04085at 4349.397 kb on - strand, within ECD_04085at 4349.398 kb on + strand, within ECD_04085at 4349.454 kb on - strand, within ECD_04085at 4349.454 kb on - strand, within ECD_04085at 4349.454 kb on - strand, within ECD_04085at 4349.458 kb on - strand, within ECD_04085at 4349.461 kb on + strand, within ECD_04085at 4349.462 kb on - strand, within ECD_04085at 4349.511 kb on + strand, within ECD_04085at 4349.511 kb on + strand, within ECD_04085at 4349.512 kb on - strand, within ECD_04085at 4349.512 kb on - strand, within ECD_04085at 4349.567 kb on + strand, within ECD_04085at 4349.598 kb on - strand, within ECD_04085at 4349.622 kb on - strand, within ECD_04085at 4349.668 kb on + strand, within ECD_04085at 4349.669 kb on - strand, within ECD_04085at 4349.669 kb on - strand, within ECD_04085at 4349.763 kb on - strandat 4349.801 kb on - strandat 4349.825 kb on + strandat 4349.849 kb on + strandat 4349.849 kb on + strandat 4349.850 kb on - strandat 4349.853 kb on + strandat 4349.853 kb on + strandat 4349.854 kb on - strandat 4349.854 kb on - strandat 4349.854 kb on - strandat 4349.939 kb on + strandat 4349.940 kb on - strandat 4349.940 kb on - strandat 4349.940 kb on - strandat 4349.970 kb on + strandat 4349.983 kb on + strandat 4349.984 kb on - strandat 4349.986 kb on - strandat 4349.986 kb on - strandat 4350.033 kb on + strandat 4350.161 kb on + strandat 4350.171 kb on + strandat 4350.269 kb on - strand, within ECD_04086at 4350.269 kb on - strand, within ECD_04086at 4350.377 kb on + strand, within ECD_04086at 4350.378 kb on - strand, within ECD_04086at 4350.386 kb on + strand, within ECD_04086at 4350.395 kb on + strand, within ECD_04086at 4350.460 kb on - strand, within ECD_04086at 4350.478 kb on + strand, within ECD_04086at 4350.478 kb on + strand, within ECD_04086at 4350.479 kb on - strand, within ECD_04086at 4350.484 kb on - strand, within ECD_04086at 4351.015 kb on - strand, within ECD_04087at 4351.032 kb on - strand, within ECD_04087at 4351.041 kb on + strand, within ECD_04087at 4351.042 kb on - strand, within ECD_04087at 4351.042 kb on - strand, within ECD_04087at 4351.045 kb on - strand, within ECD_04087at 4351.203 kb on + strand, within ECD_04087at 4351.203 kb on + strand, within ECD_04087at 4351.204 kb on - strand, within ECD_04087at 4351.204 kb on - strand, within ECD_04087at 4351.204 kb on - strand, within ECD_04087at 4351.214 kb on - strand, within ECD_04087at 4351.232 kb on - strand, within ECD_04087at 4351.260 kb on + strand, within ECD_04087at 4351.272 kb on + strand, within ECD_04087at 4351.300 kb on - strand, within ECD_04087at 4351.415 kb on + strandat 4351.416 kb on - strandat 4351.416 kb on - strandat 4351.421 kb on - strandat 4351.460 kb on + strandat 4351.460 kb on + strandat 4351.460 kb on + strandat 4351.460 kb on + strandat 4351.460 kb on + strandat 4351.461 kb on - strandat 4351.461 kb on - strandat 4351.461 kb on - strandat 4351.461 kb on - strandat 4351.540 kb on + strandat 4351.541 kb on - strandat 4351.542 kb on + strandat 4351.543 kb on - strandat 4351.570 kb on + strandat 4351.638 kb on + strandat 4351.638 kb on + strandat 4351.638 kb on + strandat 4351.639 kb on - strandat 4351.639 kb on - strandat 4351.670 kb on + strandat 4351.673 kb on + strandat 4351.704 kb on + strandat 4351.704 kb on + strandat 4351.704 kb on + strandat 4351.704 kb on + strandat 4351.707 kb on + strandat 4351.721 kb on + strandat 4351.721 kb on + strandat 4351.722 kb on - strandat 4351.744 kb on + strandat 4351.768 kb on + strand, within ECD_04088at 4351.772 kb on + strand, within ECD_04088at 4351.796 kb on + strand, within ECD_04088at 4351.798 kb on + strand, within ECD_04088at 4351.798 kb on + strand, within ECD_04088at 4351.798 kb on + strand, within ECD_04088at 4351.798 kb on + strand, within ECD_04088at 4351.799 kb on - strand, within ECD_04088at 4351.799 kb on - strand, within ECD_04088

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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4,349,165 + ECD_04085 0.61 -0.1
4,349,165 + ECD_04085 0.61 -0.3
4,349,165 + ECD_04085 0.61 +0.1
4,349,198 - ECD_04085 0.63 +0.7
4,349,302 + ECD_04085 0.68 -0.1
4,349,322 - ECD_04085 0.69 -0.2
4,349,397 - ECD_04085 0.73 +0.6
4,349,398 + ECD_04085 0.73 +0.1
4,349,454 - ECD_04085 0.76 +0.4
4,349,454 - ECD_04085 0.76 +0.4
4,349,454 - ECD_04085 0.76 -1.0
4,349,458 - ECD_04085 0.76 +0.4
4,349,461 + ECD_04085 0.76 +0.2
4,349,462 - ECD_04085 0.76 -0.3
4,349,511 + ECD_04085 0.79 -0.6
4,349,511 + ECD_04085 0.79 -0.3
4,349,512 - ECD_04085 0.79 +0.1
4,349,512 - ECD_04085 0.79 -0.4
4,349,567 + ECD_04085 0.82 -0.5
4,349,598 - ECD_04085 0.83 +0.7
4,349,622 - ECD_04085 0.84 +0.3
4,349,668 + ECD_04085 0.87 -0.7
4,349,669 - ECD_04085 0.87 -0.4
4,349,669 - ECD_04085 0.87 -0.2
4,349,763 - -0.4
4,349,801 - -0.1
4,349,825 + +0.4
4,349,849 + +0.7
4,349,849 + -0.2
4,349,850 - +0.0
4,349,853 + +0.3
4,349,853 + +0.0
4,349,854 - -0.0
4,349,854 - -0.1
4,349,854 - -0.1
4,349,939 + +0.2
4,349,940 - -0.1
4,349,940 - +0.1
4,349,940 - +1.1
4,349,970 + -0.3
4,349,983 + +0.6
4,349,984 - +0.4
4,349,986 - +0.2
4,349,986 - +0.4
4,350,033 + -0.2
4,350,161 + -0.9
4,350,171 + -2.3
4,350,269 - ECD_04086 0.21 -2.5
4,350,269 - ECD_04086 0.21 -0.6
4,350,377 + ECD_04086 0.35 -0.6
4,350,378 - ECD_04086 0.36 -1.9
4,350,386 + ECD_04086 0.37 -1.6
4,350,395 + ECD_04086 0.38 -0.8
4,350,460 - ECD_04086 0.47 -1.1
4,350,478 + ECD_04086 0.49 -0.4
4,350,478 + ECD_04086 0.49 -3.3
4,350,479 - ECD_04086 0.49 -1.2
4,350,484 - ECD_04086 0.50 -0.2
4,351,015 - ECD_04087 0.31 -0.0
4,351,032 - ECD_04087 0.34 -0.0
4,351,041 + ECD_04087 0.35 +0.7
4,351,042 - ECD_04087 0.35 +0.3
4,351,042 - ECD_04087 0.35 -0.2
4,351,045 - ECD_04087 0.36 +0.8
4,351,203 + ECD_04087 0.64 +0.0
4,351,203 + ECD_04087 0.64 -0.1
4,351,204 - ECD_04087 0.65 +0.2
4,351,204 - ECD_04087 0.65 -0.3
4,351,204 - ECD_04087 0.65 -0.3
4,351,214 - ECD_04087 0.66 -0.1
4,351,232 - ECD_04087 0.70 +0.4
4,351,260 + ECD_04087 0.75 +0.2
4,351,272 + ECD_04087 0.77 +0.4
4,351,300 - ECD_04087 0.82 +0.2
4,351,415 + +0.1
4,351,416 - +0.1
4,351,416 - +0.9
4,351,421 - +0.7
4,351,460 + +0.2
4,351,460 + +0.2
4,351,460 + -0.1
4,351,460 + -0.6
4,351,460 + +0.0
4,351,461 - -0.2
4,351,461 - -0.1
4,351,461 - -0.2
4,351,461 - -0.2
4,351,540 + +0.6
4,351,541 - -0.1
4,351,542 + +0.1
4,351,543 - +0.5
4,351,570 + -0.0
4,351,638 + -0.2
4,351,638 + -0.2
4,351,638 + +0.9
4,351,639 - +0.4
4,351,639 - +0.2
4,351,670 + -0.4
4,351,673 + +0.1
4,351,704 + -0.2
4,351,704 + -0.3
4,351,704 + -0.5
4,351,704 + +0.4
4,351,707 + -0.1
4,351,721 + +0.2
4,351,721 + +0.2
4,351,722 - +0.5
4,351,744 + +0.2
4,351,768 + ECD_04088 0.20 -0.4
4,351,772 + ECD_04088 0.22 +0.3
4,351,796 + ECD_04088 0.34 +0.2
4,351,798 + ECD_04088 0.35 -0.0
4,351,798 + ECD_04088 0.35 +0.2
4,351,798 + ECD_04088 0.35 +0.2
4,351,798 + ECD_04088 0.35 +0.2
4,351,799 - ECD_04088 0.35 +0.6
4,351,799 - ECD_04088 0.35 -0.1

Or see this region's nucleotide sequence