Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_r00022 and ECD_03884 are separated by 292 nucleotides ECD_03884 and ECD_03885 are separated by 156 nucleotides ECD_03885 and ECD_03886 are separated by 268 nucleotides
ECD_r00022: ECD_r00022 - 5S ribosomal RNA, at 4,121,153 to 4,121,272
_r00022
ECD_03884: ECD_03884 - GNAT-family putative N-acetyltransferase; acetyl coenzyme A-binding protein, at 4,121,565 to 4,122,008
_03884
ECD_03885: ECD_03885 - homoserine O-transsuccinylase, at 4,122,165 to 4,123,094
_03885
ECD_03886: ECD_03886 - malate synthase A, at 4,123,363 to 4,124,964
_03886
Position (kb) 4122
4123
4124 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4121.579 kb on - strand at 4121.643 kb on - strand, within ECD_03884 at 4121.659 kb on + strand, within ECD_03884 at 4121.660 kb on - strand, within ECD_03884 at 4121.660 kb on - strand, within ECD_03884 at 4121.748 kb on + strand, within ECD_03884 at 4121.777 kb on + strand, within ECD_03884 at 4121.793 kb on - strand, within ECD_03884 at 4121.883 kb on + strand, within ECD_03884 at 4121.884 kb on - strand, within ECD_03884 at 4121.905 kb on + strand, within ECD_03884 at 4122.000 kb on - strand at 4122.022 kb on - strand at 4122.117 kb on + strand at 4122.144 kb on - strand at 4122.148 kb on - strand at 4122.272 kb on + strand, within ECD_03885 at 4122.434 kb on + strand, within ECD_03885 at 4122.446 kb on + strand, within ECD_03885 at 4122.677 kb on + strand, within ECD_03885 at 4122.677 kb on + strand, within ECD_03885 at 4122.778 kb on - strand, within ECD_03885 at 4122.823 kb on - strand, within ECD_03885 at 4122.823 kb on - strand, within ECD_03885 at 4122.837 kb on - strand, within ECD_03885 at 4122.877 kb on - strand, within ECD_03885 at 4122.946 kb on - strand, within ECD_03885 at 4122.946 kb on - strand, within ECD_03885 at 4122.951 kb on + strand, within ECD_03885 at 4122.951 kb on + strand, within ECD_03885 at 4122.951 kb on + strand, within ECD_03885 at 4122.951 kb on + strand, within ECD_03885 at 4122.977 kb on + strand, within ECD_03885 at 4123.035 kb on + strand at 4123.039 kb on - strand at 4123.059 kb on + strand at 4123.092 kb on + strand at 4123.133 kb on + strand at 4123.134 kb on - strand at 4123.411 kb on + strand at 4123.412 kb on - strand at 4123.623 kb on - strand, within ECD_03886 at 4123.643 kb on + strand, within ECD_03886 at 4123.803 kb on + strand, within ECD_03886 at 4123.804 kb on - strand, within ECD_03886 at 4123.991 kb on - strand, within ECD_03886 at 4123.997 kb on - strand, within ECD_03886 at 4124.053 kb on + strand, within ECD_03886 at 4124.054 kb on - strand, within ECD_03886 at 4124.054 kb on - strand, within ECD_03886
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 4,121,579 - +0.4 4,121,643 - ECD_03884 0.18 +0.5 4,121,659 + ECD_03884 0.21 +0.7 4,121,660 - ECD_03884 0.21 +0.3 4,121,660 - ECD_03884 0.21 +0.7 4,121,748 + ECD_03884 0.41 -0.4 4,121,777 + ECD_03884 0.48 +0.5 4,121,793 - ECD_03884 0.51 +1.0 4,121,883 + ECD_03884 0.72 +0.3 4,121,884 - ECD_03884 0.72 +0.3 4,121,905 + ECD_03884 0.77 +0.0 4,122,000 - -0.7 4,122,022 - +0.4 4,122,117 + -0.1 4,122,144 - -0.1 4,122,148 - -1.1 4,122,272 + ECD_03885 0.12 -1.2 4,122,434 + ECD_03885 0.29 -0.7 4,122,446 + ECD_03885 0.30 -0.6 4,122,677 + ECD_03885 0.55 -0.9 4,122,677 + ECD_03885 0.55 -1.0 4,122,778 - ECD_03885 0.66 -0.5 4,122,823 - ECD_03885 0.71 -0.8 4,122,823 - ECD_03885 0.71 -2.1 4,122,837 - ECD_03885 0.72 +0.8 4,122,877 - ECD_03885 0.77 -0.2 4,122,946 - ECD_03885 0.84 -0.9 4,122,946 - ECD_03885 0.84 -0.9 4,122,951 + ECD_03885 0.85 -0.8 4,122,951 + ECD_03885 0.85 -0.6 4,122,951 + ECD_03885 0.85 -0.5 4,122,951 + ECD_03885 0.85 +0.1 4,122,977 + ECD_03885 0.87 -0.9 4,123,035 + +0.4 4,123,039 - +1.8 4,123,059 + +0.0 4,123,092 + +0.2 4,123,133 + -0.2 4,123,134 - +0.5 4,123,411 + -0.2 4,123,412 - -0.0 4,123,623 - ECD_03886 0.16 +0.2 4,123,643 + ECD_03886 0.17 +0.3 4,123,803 + ECD_03886 0.27 -0.1 4,123,804 - ECD_03886 0.28 +0.0 4,123,991 - ECD_03886 0.39 -0.4 4,123,997 - ECD_03886 0.40 -0.2 4,124,053 + ECD_03886 0.43 +1.0 4,124,054 - ECD_03886 0.43 +2.1 4,124,054 - ECD_03886 0.43 -0.4
Or see this region's nucleotide sequence